Author details

Full Name

Mats Ljungman

Affiliation

ORCID

Career Start Year

1988

Papers

152

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37292896	The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.	bioRxiv	2023
36219176	miRNA analysis reveals novel dysregulated pathways in amyotrophic lateral sclerosis.	Hum Mol Genet	2023
37588763	First-in-Class NADH/Ubiquinone Oxidoreductase Core Subunit S7 (NDUFS7) Antagonist for the Treatment of Pancreatic Cancer.	ACS Pharmacol Transl Sci	2023
37647805	Histone H3 K27M-mediated regulation of cancer cell stemness and differentiation in diffuse midline glioma.	Neoplasia	2023
37616559	Cdc73 protects Notch-induced T-cell leukemia cells from DNA damage and mitochondrial stress.		2023
37214957	KLIPP - a precision CRISPR approach to target structural variant junctions in cancer.		2023
37140208	KMT2D links TGF-Î² signaling to noncanonical activin pathway and regulates pancreatic cancer cell plasticity.		2023
36691073	GRHL2-controlled gene expression networks in luminal breast cancer.	Cell Commun Signal	2023
34583087	KDM6A Regulates Cell Plasticity and Pancreatic Cancer Progression by Noncanonical Activin Pathway.	Cellular and Molecular Gastroenterology and Hepatology	2022
36111258	CDK12 regulates co-transcriptional splicing and RNA turnover in human cells.	iScience	2022
35914488	Transcription and genome integrity.		2022
36306422	KDM6A Loss Recruits Tumor-Associated Neutrophils and Promotes Neutrophil Extracellular Trap Formation in Pancreatic Cancer.	Cancer Research	2022
35653119	EWS::FLI1 and HOXD13 Control Tumor Cell Plasticity in Ewing Sarcoma.	Clin Cancer Res	2022
35439009	Induction of Genes Implicated in Stress Response and Autophagy by a Novel Quinolin-8-yl-nicotinamide QN523 in Pancreatic Cancer.	Journal of Medicinal Chemistry	2022
36497055	Divergent Molecular and Cellular Responses to Low and High-Dose Ionizing Radiation.	Cells	2022
33106374	Transcriptomic Analysis of Diffuse Intrinsic Pontine Glioma (DIPG) Identifies a Targetable ALDH-Positive Subset of Highly Tumorigenic Cancer Stem-like Cells.	Molecular Cancer Research	2021
34181717	Locus-specific transcription silencing at the FHIT gene suppresses replication stress-induced copy number variant formation and associated replication delay.	Nucleic Acids Res	2021
33637760	A CSB-PAF1C axis restores processive transcription elongation after DNA damage repair.	Nature Communications	2021
33531374	The Hydroxyquinoline Analogue YUM70 Inhibits GRP78 to Induce ER Stress-Mediated Apoptosis in Pancreatic Cancer.	Cancer Research	2021
34108663	ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation.	Nat Cell Biol	2021
34158510	Dissecting regulatory pathways for transcription recovery following DNA damage reveals a non-canonical function of the histone chaperone HIRA.	Nature Communications	2021
33975916	Co-transcriptional splicing efficiencies differ within genes and between cell types.	RNA	2021
32830969	Characterization of Aminobenzylphenols as Protein Disulfide Isomerase Inhibitors in Glioblastoma Cell Lines.	Journal of Medicinal Chemistry	2020
31941784	Nascent Transcriptomics Reveal Cellular Prolytic Factors Upregulated Upstream of the Latent-to-Lytic Switch Protein of Epstein-Barr Virus.	Journal of Virology	2020
31709421	Characterization of novel primary miRNA transcription units in human cells using Bru-seq nascent RNA sequencing.	NAR Genom Bioinform	2020
32550915	Up-regulation of hypoxia-inducible factor antisense as a novel approach to treat ovarian cancer.	Theranostics	2020
32753408	Principles of mRNA control by human PUM proteins elucidated from multimodal experiments and integrative data analysis.	RNA	2020
32809827	A Novel Redox Modulator Induces a GPX4-Mediated Cell Death That Is Dependent on Iron and Reactive Oxygen Species.	Journal of Medicinal Chemistry	2020
32748543	Discovery of Mitochondrial Transcription Inhibitors Active in Pancreatic Cancer Cells.	ChemMedChem	2020
32688248	UAE1 inhibition mediates the unfolded protein response, DNA damage and caspase-dependent cell death in pancreatic cancer.	Translational Oncology	2020
32680994	3D genome organization contributes to genome instability at fragile sites.	Nature Communications	2020
32571799	Deletion of Glutathione S-Transferase Omega 1 Activates Type I Interferon Genes and Downregulates Tissue Factor.	Cancer Res	2020
32958772	Regulation of cellular sterol homeostasis by the oxygen responsive noncoding RNA lincNORS.	Nat Commun	2020
33060836	CHD7 promotes neural progenitor differentiation in embryonic stem cells via altered chromatin accessibility and nascent gene expression.	Sci Rep	2020
33159065	Publisher Correction: Regulation of cellular sterol homeostasis by the oxygen responsive noncoding RNA lincNORS.	Nat Commun	2020
31534498	Multi-omics profiling reveals key signaling pathways in ovarian cancer controlled by STAT3.	Theranostics	2019
30595451	Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.	Cell	2019
30643195	ATDC mediates a TP63-regulated basal cancer invasive program.	Oncogene	2019
30760578	IDH1-R132H acts as a tumor suppressor in glioma via epigenetic up-regulation of the DNA damage response.	Sci Transl Med	2019
30759340	Design, Synthesis, and Biological Evaluation of Novel Allosteric Protein Disulfide Isomerase Inhibitors.	Journal of Medicinal Chemistry	2019
30955886	Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with Replication.	Cell	2019
31395348	The role of H3K79 methylation in transcription and the DNA damage response.	Mutation Research - Reviews in Mutation Research	2019
30996048	Activation of the Unfolded Protein Response via Inhibition of Protein Disulfide Isomerase Decreases the Capacity for DNA Repair to Sensitize Glioblastoma to Radiotherapy.	Cancer Research	2019
31149044	Inhibition of protein disulfide isomerase in glioblastoma causes marked downregulation of DNA repair and DNA damage response genes.	Theranostics	2019
31048544	ATDC is required for the initiation of KRAS-induced pancreatic tumorigenesis.	Genes and Development	2019
29808028	Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression.	Nat Genet	2018
30074477	HNF1A is a novel oncogene that regulates human pancreatic cancer stem cell properties.	eLife	2018
30030424	Abnormal RNA stability in amyotrophic lateral sclerosis.	Nat Commun	2018
30253345	Synthesis and mechanistic studies of quinolin-chlorobenzothioate derivatives with proteasome inhibitory activity in pancreatic cancer cell lines.	European Journal of Medicinal Chemistry	2018
29672864	Menin regulates the serine biosynthetic pathway in Ewing sarcoma.	J Pathol	2018