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Author Details

Igor Ulitsky
Weizmann Institute of Science
2006
106
49
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36596869Long non-coding RNAs: definitions, functions, challenges and recommendations.Nat Rev Mol Cell Biol2023
37794265The status of the human gene catalogue.Nature2023
37742186Silc1 long noncoding RNA is an immediate-early gene promoting efficient memory formation.Cell Rep2023
37783604Noncoding snoRNA host genes are a distinct subclass of long noncoding RNAs.Trends Genet2023
37982748CENTRE: a gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction.Bioinformatics2023
37256750Complex regulation of Eomes levels mediated through distinct functional features of the Meteor long non-coding RNA locus.Cell Rep2023
37261910Mucosal transcriptomics highlight lncRNAs implicated in ulcerative colitis, Crohn's disease, and celiac disease.JCI Insight2023
36994150The status of the human gene catalogue.ArXiv2023
36655602GATA6-AS1 Regulates Intestinal Epithelial Mitochondrial Functions, and its Reduced Expression is Linked to Intestinal Inflammation and Less Favourable Disease Course in Ulcerative Colitis.J Crohns Colitis2023
36721160Folylpolyglutamate synthetase mRNA G-quadruplexes regulate its cell protrusion localization and enhance a cancer cell invasive phenotype upon folate repletion.BMC Biol2023
36445168miR-4734 conditionally suppresses ER stress-associated proinflammatory responses.FEBS Lett2023
36646877Massively parallel identification of mRNA localization elements in primary cortical neurons.Nat Neurosci2023
35196484Nucleoporin-93 reveals a common feature of aggressive breast cancers: robust nucleocytoplasmic transport of transcription factors.Cell Rep2022
35762231OCT4 activates a Suv39h1-repressive antisense lncRNA to couple histone H3 Lysine 9 methylation to pluripotency.Nucleic Acids Res2022
35362230Unique features of transcription termination and initiation at closely spaced tandem human genes.Mol Syst Biol2022
35562482Substoichiometric action of long noncoding RNAs.Nat Cell Biol2022
35513423Context-specific effects of sequence elements on subcellular localization of linear and circular RNAs.Nat Commun2022
35849342Cap-independent translation and a precisely located RNA sequence enable SARS-CoV-2 to control host translation and escape anti-viral response.Nucleic Acids Res2022
35848129Unique features of transcription termination and initiation at closely spaced tandem human genes.Mol Syst Biol2022
36460754Nuclear localization of Meg3-ex10 in mice lateral septum after social fear extinction.Mol Psychiatry2022
34981665Discovering functional motifs in long noncoding RNAs.Wiley Interdiscip Rev RNA2022
35338311Transcriptome and chromatin alterations in social fear indicate association of MEG3 with successful extinction of fear.Mol Psychiatry2022
33131415Identification and characterization of key long non-coding RNAs in the mouse cochlea.RNA Biol2021
37744127The GUL-1 Protein Binds Multiple RNAs Involved in Cell Wall Remodeling and Affects the MAK-1 Pathway in <i>Neurospora crassa</i>.Front Fungal Biol2021
33795881Author Correction: Inefficient splicing curbs noncoding RNA transcription.Nat Struct Mol Biol2021
33793068The evolutionarily conserved long non-coding RNA LINC00261 drives neuroendocrine prostate cancer proliferation and metastasis via distinct nuclear and cytoplasmic mechanisms.Mol Oncol2021
33767453Inefficient splicing curbs noncoding RNA transcription.Nat Struct Mol Biol2021
33540814Novel Transcript Discovery Expands the Repertoire of Pathologically-Associated, Long Non-Coding RNAs in Vascular Smooth Muscle Cells.Int J Mol Sci2021
33703914MIR503HG Loss Promotes Endothelial-to-Mesenchymal Transition in Vascular Disease.Circ Res2021
34353939Therapy based on functional RNA elements.Science2021
33938020High-resolution mapping of function and protein binding in an RNA nuclear enrichment sequence.EMBO J2021
33979833SARS-CoV-2 uses a multipronged strategy to impede host protein synthesis.Nature2021
33172932SCIRT lncRNA Restrains Tumorigenesis by Opposing Transcriptional Programs of Tumor-Initiating Cells.Cancer Res2021
33430943Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequences.Genome Biol2021
32294471Transcription Dynamics Regulate Poly(A) Tails and Expression of the RNA Degradation Machinery to Balance mRNA Levels.Mol Cell2020
32090359A guide to naming human non-coding RNA genes.EMBO J2020
31729473Regulation of gene expression by cis-acting long non-coding RNAs.Nat Rev Genet2020
32005828A MAFG-lncRNA axis links systemic nutrient abundance to hepatic glucose metabolism.Nat Commun2020
32969152Regulation of neuronal commitment in mouse embryonic stem cells by the Reno1/Bahcc1 locus.EMBO Rep2020
32641823Author Correction: In-cell identification and measurement of RNA-protein interactions.Nat Commun2020
32504555Gene Architecture and Sequence Composition Underpin Selective Dependency of Nuclear Export of Long RNAs on NXF1 and the TREX Complex.Mol Cell2020
32359440Cross-Species Single-Cell Analysis Reveals Divergence of the Primate Microglia Program.Cell2020
30590745Alternative 3' UTRs direct localization of functionally diverse protein isoforms in neuronal compartments.Nucleic Acids Res2019
31757954In-cell identification and measurement of RNA-protein interactions.Nat Commun2019
31704914Regulation of CHD2 expression by the Chaserr long noncoding RNA gene is essential for viability.Nat Commun2019
31900326Long Noncoding RNAs in Development and Regeneration of the Neural Lineage.Cold Spring Harb Symp Quant Biol2019
31835035Cross-Species Single-Cell Analysis Reveals Divergence of the Primate Microglia Program.Cell2019
31214683Endothelial function and dysfunction in the cardiovascular system: the long non-coding road.Cardiovasc Res2019
31339449The Human-Specific and Smooth Muscle Cell-Enriched LncRNA SMILR Promotes Proliferation by Regulating Mitotic CENPF mRNA and Drives Cell-Cycle Progression Which Can Be Targeted to Limit Vascular Remodeling.Circ Res2019
31100387The EXPANDER Integrated Platform for Transcriptome Analysis.J Mol Biol2019
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Collaborators

Ron Shamir
Tel Aviv University
Co-authored papers 23
Ido Amit
Weizmann Institute of Science
Co-authored papers 3
Roded Sharan
Tel Aviv University
Co-authored papers 3
Amos Tanay
Weizmann Institute of Science
Co-authored papers 3
Shalev Itzkovitz
Co-authored papers 3
Thomas R Gingeras
Stanley Institute for Cognitive Genomics
Co-authored papers 3
Eytan Ruppin
National Cancer Institute
Co-authored papers 3
Franz-Josef Müller
Co-authored papers 3
Terence D Murphy
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 2
Marco Prinz
Co-authored papers 2
Peter F Stadler
Co-authored papers 2
Jennifer Harrow
Co-authored papers 2
Florent Ginhoux
Co-authored papers 2
Frank Buchholz
University Hospital Carl Gustav Carus, Technische Universitat (TU) Dresden
Co-authored papers 2
Mihaela Pertea
Center for Computational Biology, Johns Hopkins University
Co-authored papers 2
Adam Frankish
Co-authored papers 2
Edith Heard
Institut Curie, PSL Research University, CNRS UMR 5, INSERM U934
Co-authored papers 2
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Noah Stern
Weizmann Institute of Science
Co-authored papers 2
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 2
Rory Johnson
Co-authored papers 2
Mark Yandell
University of Utah
Co-authored papers 2
Kim D Pruitt
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 2
Francisco M De La Vega
Stanford University School of Medicine
Co-authored papers 2
Jian-Bing Fan
Nanfang Hospital and Basic Medical College, Southern Medical University
Co-authored papers 1
Jana Hertel
Co-authored papers 1
Michael Rehman
Institute of Biochemistry, Friedrich-Alexander-University of Erlangen-Nurnberg
Co-authored papers 1
Masayuki Yamamoto
Tohoku University Graduate School of Medicine, Tohoku University
Co-authored papers 1
Altuna Akalin
Berlin Institute for Medical Systems Biology
Co-authored papers 1
Yardena Samuels
Weizmann Institute of Science
Co-authored papers 1
Release 1.2