Author details

Full Name

Nizar N Batada

Affiliation

Institute of Genetics and Molecular Medicine, University of Edinburgh

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36480166	PD-1 and TIM-3 differentially regulate subsets of mouse IL-17A-producing Î³Î´ T cells.	J Exp Med	2023
36622347	Correction: Single-cell RNA sequencing of human breast tumour-infiltrating immune cells reveals a Î³Î´ T-cell subtype associated with good clinical outcome.	Life Sci Alliance	2022
32151972	scID Uses Discriminant Analysis to Identify Transcriptionally Equivalent Cell Types across Single-Cell RNA-Seq Data with Batch Effect.	iScience	2020
32000794	Is there a causal link between PTEN deficient tumors and immunosuppressive tumor microenvironment?	J Transl Med	2020
31760894	SET8 localization to chromatin flanking DNA damage is dependent on RNF168 ubiquitin ligase.	Cell Cycle	2020
33268347	Single-cell RNA sequencing of human breast tumour-infiltrating immune cells reveals a Î³Î´ T-cell subtype associated with good clinical outcome.	Life Sci Alliance	2020
30842215	Wnt and Notch signaling govern self-renewal and differentiation in a subset of human glioblastoma stem cells.	Genes Dev	2019
28549257	Human somatic cells deficient for RAD52 are impaired for viral integration and compromised for most aspects of homology-directed repair.	DNA Repair (Amst)	2017
29115978	Depletion of somatic mutations in splicing-associated sequences in cancer genomes.	Genome Biol	2017
26292731	Limiting replication stress during somatic cell reprogramming reduces genomic instability in induced pluripotent stem cells.	Nat Commun	2015
24511469	Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells.	Stem Cell Reports	2014
25408883	Aberrant DNA methylation reprogramming during induced pluripotent stem cell generation is dependent on the choice of reprogramming factors.	Cell Regen	2014
25252681	SET8 methyltransferase activity during the DNA double-strand break response is required for recruitment of 53BP1.	EMBO Rep	2014
22162363	Elevated coding mutation rate during the reprogramming of human somatic cells into induced pluripotent stem cells.	Stem Cells	2012
22911296	Frequent mutations in TP53 and CDKN2A found by next-generation sequencing of head and neck cancer cell lines.	Arch Otolaryngol Head Neck Surg	2012
21368824	Copy number variation and selection during reprogramming to pluripotency.	Nature	2011
18989456	The impact of the nucleosome code on protein-coding sequence evolution in yeast.	PLoS Genet	2008
18998772	Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome.	PLoS Biol	2008
17822800	Chromatin remodelling is a major source of coexpression of linked genes in yeast.	Trends Genet	2007
17564494	Still stratus not altocumulus: further evidence against the date/party hub distinction.	PLoS Biol	2007
17660811	Evolution of chromosome organization driven by selection for reduced gene expression noise.	Nat Genet	2007
16699596	Spatial regulation and the rate of signal transduction activation.	PLoS Comput Biol	2006
16839197	Evolutionary and physiological importance of hub proteins.	PLoS Comput Biol	2006
16762047	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.	J Biol	2006
16984220	Stratus not altocumulus: a new view of the yeast protein interaction network.	PLoS Biol	2006
16186260	Spines and neurite branches function as geometric attractors that enhance protein kinase C action.	J Cell Biol	2005
15096590	Stochastic model of protein-protein interaction: why signaling proteins need to be colocalized.	Proc Natl Acad Sci U S A	2004
14871859	CNplot: visualizing pre-clustered networks.	Bioinformatics	2004
15574497	Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center.	Proc Natl Acad Sci U S A	2004

1 - 29 of 29

Diala Abd-Rabbo

Princess Margaret Cancer Centre, University Health Network

Career Start Year 2012

Number of shared co-authors 2

Vera Pancaldi

Universite de Toulouse, Inserm, CNRS, Universite Toulouse III-Paul Sabatier

Career Start Year 2009

Number of shared co-authors 0

Richard Mitter

The Francis Crick Institute

Career Start Year 2008

Number of shared co-authors 1

Jonathan E Bard

University at Buffalo

Career Start Year 2007

Number of shared co-authors 0

Jasmin Coulombe-Huntington

Institute for Research in Immunology and Cancer, Universite de Montreal

Career Start Year 2007

Number of shared co-authors 10

Thanasis Margaritis

Princess Maxima Center for Pediatric Oncology

Career Start Year 2006

Number of shared co-authors 0

Yue Lu

The University of Texas MD Anderson Cancer Center

Career Start Year 2006

Number of shared co-authors 1

Xiaotu Ma

St. Jude Children's Research Hospital

Career Start Year 2006

Number of shared co-authors 0

J Peter Svensson

Karolinska Institutet

Career Start Year 2005

Number of shared co-authors 1

Jun S Song

University of Illinois at Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 0

Itay Tirosh

Weizmann Institute of Medical Sciences

Career Start Year 2005

Number of shared co-authors 0

Kun Qu

University of Science and Technology of China

Career Start Year 2005

Number of shared co-authors 1

Guillaume J Filion

University of Toronto Scarborough

Career Start Year 2004

Number of shared co-authors 1

Amos Tanay

Weizmann Institute of Science

Career Start Year 2001

Number of shared co-authors 3

Mikhail G Dozmorov

Virginia Commonwealth University

Career Start Year 2001

Number of shared co-authors 0

Stefan Bekiranov

University of Virginia

Career Start Year 2000

Number of shared co-authors 0

Sarah J Wheelan

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1998

Number of shared co-authors 2

Lars M Steinmetz

Stanford University

Career Start Year 1998

Number of shared co-authors 3

Martin Hirst

University of British Columbia

Career Start Year 1998

Number of shared co-authors 5

Roland Eils

Berlin Institute of Health (BIH) and Charite

Career Start Year 1995

Number of shared co-authors 3

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 2

Alistair R R Forrest

RIKEN Center for Integrative Medical Sciences

Career Start Year 1994

Number of shared co-authors 1

Sheng Zhong

Peking-Tsinghua Center for Life Sciences, College of Life Sciences, Peking University

Career Start Year 1994

Number of shared co-authors 0

Howard Y Chang

Center for Personal Dynamic Regulomes, Stanford University

Career Start Year 1992

Number of shared co-authors 3

Jeffrey J Delrow

Clinical Research Division, Fred Hutchinson Cancer Research Center

Career Start Year 1992

Number of shared co-authors 0

Frank C P Holstege

Princess Maxima Center for Pediatric Oncology

Career Start Year 1990

Number of shared co-authors 2

Aviv Regev

Broad Institute of MIT and Harvard

Career Start Year 1987

Number of shared co-authors 4

Nir Yosef

Center for Computational Biology, University of California berkeley

Career Start Year 1986

Number of shared co-authors 0

Yuval Kluger

Yale University School of Medicine

Career Start Year 1984

Number of shared co-authors 0

Michael Snyder

Stanford University

Career Start Year 1981

Number of shared co-authors 10

row(s) 1 - 30 of 30

Mike Tyers

Institute for Research in Immunology and Cancer (IRIC), Universite de Montreal

Co-authored papers 4

Lorrie Boucher

The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital

Co-authored papers 3

Bobby-Joe Breitkreutz

The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital

Co-authored papers 3

Ashton Breitkreutz

Samuel Lunenfeld Research Institute, Mount Sinai Hospital

Co-authored papers 3

Teresa Reguly

Samuel Lunenfeld Research Institute, Mount Sinai Hospital

Co-authored papers 3

Michael Levitt

Stanford University

Co-authored papers 2

John D McPherson

Ontario Institute for Cancer Research

Co-authored papers 2

Sichun Lin

Department of Pharmaceutical Sciences, University of Toronto

Co-authored papers 2

Peter B Dirks

The Hospital for Sick Children, University of Toronto

Co-authored papers 1

Stephane Angers

Department of Pharmaceutical Sciences, University of Toronto

Co-authored papers 1

David A Palma

University of Western Ontario

Co-authored papers 1

Charles Boone

University of Toronto

Co-authored papers 1

Kenneth D Westover

University of Texas Southwestern Medical Center

Co-authored papers 1

Rose Oughtred

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 1

Quang M Trinh

Ontario Institute for Cancer Research

Co-authored papers 1

Gary C Hon

Cecil H. and Ida Green Center for Reproductive Biology Sciences

Co-authored papers 1

David T Jones

University College London

Co-authored papers 1

David A Bushnell

Stanford University

Co-authored papers 1

Timo Otonkoski

Co-authored papers 1

Kari Alitalo

Wihuri Research Institute

Co-authored papers 1

Brenda J Andrews

University of Toronto

Co-authored papers 1

Javier A Alfaro

International Centre for Cancer Vaccine Science, University of Gdansk

Co-authored papers 1

David Botstein

Calico Life Sciences LLC

Co-authored papers 1

Tobias Meyer

Co-authored papers 1

Michael D Cusimano

St. Michael's Hospital, University of Toronto

Co-authored papers 1

Olga G Troyanskya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 1

John W Barrett

University of Western Ontario

Co-authored papers 1

Reagan W Ching

Max Planck Institute of Immunobiology and Epigenetics

Co-authored papers 1

Ainslie B Parsons

University of Toronto

Co-authored papers 1

Michelle Sam

Ontario Institute for Cancer Research

Co-authored papers 1

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