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Author Details

Laurence Calzone
Institut Curie, Universite PSL
2003
55
24
Antoine Forget (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37287810Corrigendum to "Modeling signaling pathways in biology with MaBoSS: From one single cell to a dynamic population of heterogeneous interacting cells" [Comput. Struct. Biotechnol. 20 (2022) 5661-5671].Comput Struct Biotechnol J2023
37903760PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks.NPJ Syst Biol Appl2023
37289551Multiscale model of the different modes of cancer cell invasion.Bioinformatics2023
35164900Patient-specific Boolean models of signalling networks guide personalised treatments.Elife2022
35671510Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.Brief Bioinform2022
36284705Modeling signaling pathways in biology with MaBoSS: From one single cell to a dynamic population of heterogeneous interacting cells.Comput Struct Biotechnol J2022
35309516UPMaBoSS: A Novel Framework for Dynamic Cell Population Modeling.Front Mol Biosci2022
32313939Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.Brief Bioinform2021
33507915Personalized logical models to investigate cancer response to BRAF treatments in melanomas and colorectal cancers.PLoS Comput Biol2021
34939300COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34664389COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34179955SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems.Bioinformatics2021
32527218Exact solving and sensitivity analysis of stochastic continuous time Boolean models.BMC Bioinformatics2020
33281620Dynamical Boolean Modeling of Immunogenic Cell Death.Front Physiol2020
33276543Modelling of Immune Checkpoint Network Explains Synergistic Effects of Combined Immune Checkpoint Inhibitor Therapy and the Impact of Cytokines in Patient Response.Cancers (Basel)2020
33317623Convergent network effects along the axis of gene expression during prostate cancer progression.Genome Biol2020
29237040Conceptual and computational framework for logical modelling of biological networks deregulated in diseases.Brief Bioinform2019
31675377Integrative proteomic and phosphoproteomic profiling of prostate cell lines.PLoS One2019
31733513Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines.iScience2019
30169736PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling.Bioinformatics2019
30733688Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients.Front Physiol2019
30034343Prediction of Mutations to Control Pathways Enabling Tumor Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial).Front Physiol2018
29971009The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks.Front Physiol2018
30205043Aberrant ERBB4-SRC Signaling as a Hallmark of Group 4 Medulloblastoma Revealed by Integrative Phosphoproteomic Profiling.Cancer Cell2018
28681552Logic Modeling in Quantitative Systems Pharmacology.CPT Pharmacometrics Syst Pharmacol2017
29263798Classification of gene signatures for their information value and functional redundancy.NPJ Syst Biol Appl2017
28881959MaBoSS 2.0: an environment for stochastic Boolean modeling.Bioinformatics2017
26925094ROMA: Representation and Quantification of Module Activity from Target Expression Data.Front Genet2016
27613445A comprehensive approach to the molecular determinants of lifespan using a Boolean model of geroconversion.Aging Cell2016
27306057Qualitative dynamics semantics for SBGN process description.BMC Syst Biol2016
25679508Integrative multi-omics module network inference with Lemon-Tree.PLoS Comput Biol2015
26271256DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts.BMC Syst Biol2015
26528548Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration.PLoS Comput Biol2015
26238783A Modeling Approach to Explain Mutually Exclusive and Co-Occurring Genetic Alterations in Bladder Tumorigenesis.Cancer Res2015
26192618Atlas of Cancer Signalling Network: a systems biology resource for integrative analysis of cancer data with Google Maps.Oncogenesis2015
25958956Predicting genetic interactions from Boolean models of biological networks.Integr Biol (Camb)2015
25958393NaviCell Web Service for network-based data visualization.Nucleic Acids Res2015
24966078[Biological network modelling and precision medicine in oncology].Bull Cancer2014
23504387On circuit functionality in Boolean networks.Bull Math Biol2013
24099179NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps.BMC Syst Biol2013
24250280Integrative modelling of the influence of MAPK network on cancer cell fate decision.PLoS Comput Biol2013
23715983Practical use of BiNoM: a biological network manager software.Methods Mol Biol2013
23715982From a biological hypothesis to the construction of a mathematical model.Methods Mol Biol2013
23453054BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.BMC Syst Biol2013
22161334Cell death and life in cancer: mathematical modeling of cell fate decisions.Adv Exp Med Biol2012
22932419Continuous time Boolean modeling for biological signaling: application of Gillespie algorithm.BMC Syst Biol2012
20221256Mathematical modelling of cell-fate decision in response to death receptor engagement.PLoS Comput Biol2010
19602357[Systems biology of cancer].Med Sci (Paris)2009
19668183The Systems Biology Graphical Notation.Nat Biotechnol2009
18024474BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks.Bioinformatics2008
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Collaborators

Emmanuel Barillot
Institut Curie, Universite PSL
Co-authored papers 36
Andrei Zinovyev
INSERM U, Institut Curie, PSL Research University
Co-authored papers 26
Denis Thieffry
Institut de Biologie de l'Ecole Normale Superieure, Inserm, CNRS, Universite PSL
Co-authored papers 9
Aur??lien Naldi
Institut de Biologie de l'Ecole Normale Superieure, Inserm, CNRS, Universite PSL
Co-authored papers 9
Arnau Montagud
Institut Curie, PSL Research University
Co-authored papers 9
Loredana Martignetti
Institut Curie, PSL Research University
Co-authored papers 7
Julio Saez-Rodriguez
Institute of Computational Biomedicine, Heidelberg University
Co-authored papers 7
Claudine Chaouiya
Aix Marseille University CNRS
Co-authored papers 5
Aurelien Dugourd
Institute of Experimental Medicine and Systems Biology, RWTH Aachen University
Co-authored papers 4
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
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Tom C Freeman
The Roslin Institute, University of Edinburgh
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Augustin Luna
Harvard Medical School
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Chris Sander
Broad Institute of MIT and Harvard
Co-authored papers 4
Hiroaki Kitano
Co-authored papers 3
Emek Demir
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 3
Alberto Valdeolivas
Roche Pharma Research and Early Development
Co-authored papers 3
Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Karen Rothfels
Co-authored papers 2
Bertrand De Meulder
European Institute for Systems Biology and Medicine, CNRS-ENS-UCBL-INSERM
Co-authored papers 2
Lisa Matthews
NYU Grossman School of Medicine
Co-authored papers 2
Guanming Wu
Oregon Health and Science University
Co-authored papers 2
Mar??a Rodr??guez Mart??nez
Herbert Irving Cancer Research Center, Columbia University Medical Center
Co-authored papers 2
Luana Licata
University of Tor Vergata
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Cristoffer Sevilla
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