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Author Details

Inna Dubchak
Lawrence Berkeley National Laboratory
1993
105
57
PMIDPaper TitleJournal TitlePublished Year
30536693A new family of transcriptional regulators of tungstoenzymes and molybdate/tungstate transport.Environ Microbiol2019
31624164Complete Genome Sequence of a Virulent African Swine Fever Virus from a Domestic Pig in Ukraine.Microbiol Resour Announc2019
30536693A new family of transcriptional regulators of tungstoenzymes and molybdate/tungstate transport.Environ Microbiol2019
31624164Complete Genome Sequence of a Virulent African Swine Fever Virus from a Domestic Pig in Ukraine.Microbiol Resour Announc2019
29695866Genomic variation in 3,010 diverse accessions of Asian cultivated rice.Nature2018
29979655KBase: The United States Department of Energy Systems Biology Knowledgebase.Nat Biotechnol2018
29695866Genomic variation in 3,010 diverse accessions of Asian cultivated rice.Nature2018
29979655KBase: The United States Department of Energy Systems Biology Knowledgebase.Nat Biotechnol2018
27899667Rice SNP-seek database update: new SNPs, indels, and queries.Nucleic Acids Res2017
28860010Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon.Mol Phylogenet Evol2017
28849559Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks.Methods Mol Biol2017
27899667Rice SNP-seek database update: new SNPs, indels, and queries.Nucleic Acids Res2017
28849559Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks.Methods Mol Biol2017
28860010Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon.Mol Phylogenet Evol2017
25313388Rex (encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is regulated by NADH.J Bacteriol2015
25928663Elviz - exploration of metagenome assemblies with an interactive visualization tool.BMC Bioinformatics2015
25313388Rex (encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is regulated by NADH.J Bacteriol2015
26519295Functionally conserved enhancers with divergent sequences in distant vertebrates.BMC Genomics2015
26555820Ï¿54-dependent regulome in Desulfovibrio vulgaris Hildenborough.BMC Genomics2015
26519295Functionally conserved enhancers with divergent sequences in distant vertebrates.BMC Genomics2015
26555820Ï¿54-dependent regulome in Desulfovibrio vulgaris Hildenborough.BMC Genomics2015
25928663Elviz - exploration of metagenome assemblies with an interactive visualization tool.BMC Bioinformatics2015
24225321The genome portal of the Department of Energy Joint Genome Institute: 2014 updates.Nucleic Acids Res2014
25273068Alignathon: a competitive assessment of whole-genome alignment methods.Genome Res2014
24297253MycoCosm portal: gearing up for 1000 fungal genomes.Nucleic Acids Res2014
24292961High-throughput translational medicine: challenges and solutions.Adv Exp Med Biol2014
24225321The genome portal of the Department of Energy Joint Genome Institute: 2014 updates.Nucleic Acids Res2014
24860159GenomeVISTA--an integrated software package for whole-genome alignment and visualization.Bioinformatics2014
24919147The genome of Eucalyptus grandis.Nature2014
25273068Alignathon: a competitive assessment of whole-genome alignment methods.Genome Res2014
24860159GenomeVISTA--an integrated software package for whole-genome alignment and visualization.Bioinformatics2014
24919147The genome of Eucalyptus grandis.Nature2014
24297253MycoCosm portal: gearing up for 1000 fungal genomes.Nucleic Acids Res2014
24292961High-throughput translational medicine: challenges and solutions.Adv Exp Med Biol2014
23086211Transcription factor family-based reconstruction of singleton regulons and study of the Crp/Fnr, ArsR, and GntR families in Desulfovibrionales genomes.J Bacteriol2013
23913324New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria.J Bacteriol2013
24175918RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria.BMC Genomics2013
23086211Transcription factor family-based reconstruction of singleton regulons and study of the Crp/Fnr, ArsR, and GntR families in Desulfovibrionales genomes.J Bacteriol2013
23547897RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes.BMC Genomics2013
23736530Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data.Bioinformatics2013
24175918RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria.BMC Genomics2013
23913324New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria.J Bacteriol2013
23736530Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data.Bioinformatics2013
23547897RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes.BMC Genomics2013
22110030The genome portal of the Department of Energy Joint Genome Institute.Nucleic Acids Res2012
22700702RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics.Nucleic Acids Res2012
22110030The genome portal of the Department of Energy Joint Genome Institute.Nucleic Acids Res2012
22700702RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics.Nucleic Acids Res2012
21539902Tandem termination signal in plant mRNAs.Gene2011
21810205Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.BMC Genomics2011
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Collaborators

Adam P Arkin
Lawrence Berkeley National Laboratory
Co-authored papers 17
Pavel S Novichkov
Lawrence Berkeley National Laboratory
Co-authored papers 17
Michael Brudno
University of Toronto
Co-authored papers 14
Dmitry A Rodionov
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 12
Edward M Rubin
Co-authored papers 12
Asaf Salamov
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 12
Lior Pachter
Co-authored papers 9
Olivier Couronne
Co-authored papers 8
Len A Pennacchio
Lawrence Berkeley National Laboratory
Co-authored papers 7
Sung-Hou Kim
University of California berkeley
Co-authored papers 7
Kelly A Frazer
University of California, USA Institute for Genomic Medicine
Co-authored papers 6
Eric J Alm
Massachusetts Institute of Technology 21 Ames St. Cambridge
Co-authored papers 5
Paramvir S Dehal
Lawrence Berkeley National Laboratory
Co-authored papers 5
Serafim Batzoglou
Co-authored papers 5
V V Solov'ev
Softberry Inc.
Co-authored papers 4
Morgan N Price
Lawrence Berkeley National Laboratory
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Ross C Hardison
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Aindrila Mukhopadhyay
Joint BioEnergy Institute
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Konstantinos Mavromatis
Celgene Corporation
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Donna M Muzny
Baylor College of Medicine
Co-authored papers 3
David Haussler
Genomics Institute, University of California Santa Cruz
Co-authored papers 3
Laura Elnitski
National Human Genome Research Institute
Co-authored papers 3
Kim C Worley
Baylor College of Medicine
Co-authored papers 3
Margaret B Morgan
Baylor College of Medicine
Co-authored papers 3
William James Kent
Co-authored papers 3
Nikos C Kyrpides
Co-authored papers 3
Judy D Wall
University of Missouri
Co-authored papers 3
Grant M Zane
University of Missouri
Co-authored papers 3
Eduardo Eyras
Co-authored papers 3
Ian T Paulsen
Macquarie University
Co-authored papers 3
Release 1.2