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Author Details

Padraig Gleeson
University College London
2007
33
16
PMIDPaper TitleJournal TitlePublished Year
37744469The Past, Present, and Future of the Brain Imaging Data Structure (BIDS).ArXiv2024
36867658NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML.PLoS Comput Biol2023
36989443Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022.J Integr Bioinform2023
37100054Integrating model development across computational neuroscience, cognitive science, and machine learning.Neuron2023
36304489Editorial: Neuroinformatics of large-scale brain modelling.Front Neuroinform2022
34674411Specifications of standards in systems and synthetic biology: status and developments in 2021.J Integr Bioinform2021
32598315The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).J Integr Bioinform2020
32092054The SONATA data format for efficient description of large-scale network models.PLoS Comput Biol2020
30462164Harmonizing semantic annotations for computational models in biology.Brief Bioinform2019
32440654The importance of standards for sharing of computational models and data.Comput Brain Behav2019
31301675Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.J Integr Bioinform2019
31025934NetPyNE, a tool for data-driven multiscale modeling of brain circuits.Elife2019
29596055Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.J Integr Bioinform2018
30201845OpenWorm: overview and recent advances in integrative biological simulation of <i>Caenorhabditis elegans</i>.Philos Trans R Soc Lond B Biol Sci2018
30201843Geppetto: a reusable modular open platform for exploring neuroscience data and models.Philos Trans R Soc Lond B Biol Sci2018
30201842c302: a multiscale framework for modelling the nervous system of <i>Caenorhabditis elegans</i>.Philos Trans R Soc Lond B Biol Sci2018
30201832Connectome to behaviour: modelling <i>Caenorhabditis elegans</i> at cellular resolution.Philos Trans R Soc Lond B Biol Sci2018
30117501Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).Stand Genomic Sci2018
30455637Code Generation in Computational Neuroscience: A Review of Tools and Techniques.Front Neuroinform2018
28542156Toward standard practices for sharing computer code and programs in neuroscience.Nat Neurosci2017
29216458A Commitment to Open Source in Neuroscience.Neuron2017
28187405Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.J Integr Bioinform2016
26500503The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex.Front Neural Circuits2015
24763087Glutamate-bound NMDARs arising from in vivo-like network activity extend spatio-temporal integration in a L5 cortical pyramidal cell model.PLoS Comput Biol2014
25309419LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2.Front Neuroinform2014
25404913OpenWorm: an open-science approach to modeling Caenorhabditis elegans.Front Comput Neurosci2014
24795618libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience.Front Neuroinform2014
22434069Updated energy budgets for neural computation in the neocortex and cerebellum.J Cereb Blood Flow Metab2012
20585541NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail.PLoS Comput Biol2010
20696381Rapid desynchronization of an electrically coupled interneuron network with sparse excitatory synaptic input.Neuron2010
17442244neuroConstruct: a tool for modeling networks of neurons in 3D space.Neuron2007
17873371MorphML: level 1 of the NeuroML standards for neuronal morphology data and model specification.Neuroinformatics2007
17873374Interoperability of neuroscience modeling software: current status and future directions.Neuroinformatics2007
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Collaborators

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Babraham Institute
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Gustav Nilsonne
Karolinska Institutet
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Julien Cohen-Adad
Institute of Biomedical Engineering
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Arnaud Delorme
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Erik De Schutter
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Shashank Bansal
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Mathieu Boudreau
Montreal Heart Institute
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Gaia Rizzo
Imperial College London
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Tam??s Spis??k
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