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Author Details

Jun S Song
University of Illinois at Urbana-Champaign
2005
88
38
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37162994Chromatin structure and context-dependent sequence features control prime editing efficiency.bioRxiv2023
37646780Predicting the molecular functions of regulatory genetic variants associated with cancer.Oncotarget2023
37456665Chromatin structure and context-dependent sequence features control prime editing efficiency.Front Genet2023
37436963Novel SOX10 indel mutations drive schwannomas through impaired transactivation of myelination gene programs.Neuro Oncol2023
37428809Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation.PLoS Comput Biol2023
37162994Chromatin structure and context-dependent sequence features control prime editing efficiency.bioRxiv2023
37646780Predicting the molecular functions of regulatory genetic variants associated with cancer.Oncotarget2023
37456665Chromatin structure and context-dependent sequence features control prime editing efficiency.Front Genet2023
37436963Novel SOX10 indel mutations drive schwannomas through impaired transactivation of myelination gene programs.Neuro Oncol2023
37428809Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation.PLoS Comput Biol2023
35652725Spectral clustering of single-cell multi-omics data on multilayer graphs.Bioinformatics2022
35652725Spectral clustering of single-cell multi-omics data on multilayer graphs.Bioinformatics2022
33130899Functional analysis of low-grade glioma genetic variants predicts key target genes and transcription factors.Neuro Oncol2021
33789109Epigenomic tensor predicts disease subtypes and reveals constrained tumor evolution.Cell Rep2021
33920780Predicting TCR-Epitope Binding Specificity Using Deep Metric Learning and Multimodal Learning.Genes (Basel)2021
33130899Functional analysis of low-grade glioma genetic variants predicts key target genes and transcription factors.Neuro Oncol2021
34728538SOX10 Regulates Melanoma Immunogenicity through an IRF4-IRF1 Axis.Cancer Res2021
34381042Chd1 protects genome integrity at promoters to sustain hypertranscription in embryonic stem cells.Nat Commun2021
33789109Epigenomic tensor predicts disease subtypes and reveals constrained tumor evolution.Cell Rep2021
33920780Predicting TCR-Epitope Binding Specificity Using Deep Metric Learning and Multimodal Learning.Genes (Basel)2021
34381042Chd1 protects genome integrity at promoters to sustain hypertranscription in embryonic stem cells.Nat Commun2021
34728538SOX10 Regulates Melanoma Immunogenicity through an IRF4-IRF1 Axis.Cancer Res2021
32386320Adult diffuse glioma GWAS by molecular subtype identifies variants in D2HGDH and FAM20C.Neuro Oncol2020
31971940Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform.PLoS Biol2020
32187373Epigenetic engineering of yeast reveals dynamic molecular adaptation to methylation stress and genetic modulators of specific DNMT3 family members.Nucleic Acids Res2020
32386320Adult diffuse glioma GWAS by molecular subtype identifies variants in D2HGDH and FAM20C.Neuro Oncol2020
33205009Single-Cell Profiling Reveals Divergent, Globally Patterned Immune Responses in Murine Skin Inflammation.iScience2020
32765587ABC-GWAS: Functional Annotation of Estrogen Receptor-Positive Breast Cancer Genetic Variants.Front Genet2020
32794969Riemannian geometry and statistical modeling correct for batch effects and control false discoveries in single-cell surface protein count data.Phys Rev E2020
31971940Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform.PLoS Biol2020
33205009Single-Cell Profiling Reveals Divergent, Globally Patterned Immune Responses in Murine Skin Inflammation.iScience2020
32794969Riemannian geometry and statistical modeling correct for batch effects and control false discoveries in single-cell surface protein count data.Phys Rev E2020
32765587ABC-GWAS: Functional Annotation of Estrogen Receptor-Positive Breast Cancer Genetic Variants.Front Genet2020
32187373Epigenetic engineering of yeast reveals dynamic molecular adaptation to methylation stress and genetic modulators of specific DNMT3 family members.Nucleic Acids Res2020
30548162Local genomic features predict the distinct and overlapping binding patterns of the bHLH-Zip family oncoproteins MITF and MYC-MAX.Pigment Cell Melanoma Res2019
31638617Erratum: Author Correction: Targeted exon skipping with AAV-mediated split adenine base editors.Cell Discov2019
31636954Targeted exon skipping with AAV-mediated split adenine base editors.Cell Discov2019
31552090Single-Cell Transcriptomics Reveals Spatial and Temporal Turnover of Keratinocyte Differentiation Regulators.Front Genet2019
30548162Local genomic features predict the distinct and overlapping binding patterns of the bHLH-Zip family oncoproteins MITF and MYC-MAX.Pigment Cell Melanoma Res2019
30202870SequencEnG: an interactive knowledge base of sequencing techniques.Bioinformatics2019
31507631The Cancer-Associated Genetic Variant Rs3903072 Modulates Immune Cells in the Tumor Microenvironment.Front Genet2019
31638617Erratum: Author Correction: Targeted exon skipping with AAV-mediated split adenine base editors.Cell Discov2019
31636954Targeted exon skipping with AAV-mediated split adenine base editors.Cell Discov2019
30202870SequencEnG: an interactive knowledge base of sequencing techniques.Bioinformatics2019
31552090Single-Cell Transcriptomics Reveals Spatial and Temporal Turnover of Keratinocyte Differentiation Regulators.Front Genet2019
31507631The Cancer-Associated Genetic Variant Rs3903072 Modulates Immune Cells in the Tumor Microenvironment.Front Genet2019
29351903Integrative Genomic Analysis Predicts Causative <i>Cis</i>-Regulatory Mechanisms of the Breast Cancer-Associated Genetic Variant rs4415084.Cancer Res2018
30355494Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution.Cell Rep2018
30113318A unified computational framework for modeling genome-wide nucleosome landscape.Phys Biol2018
30107853CRISPR-SKIP: programmable gene splicing with single base editors.Genome Biol2018
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Collaborators

Joseph F Costello
University of California san francisco
Co-authored papers 11
David E Fisher
Cutaneous Biology Research Center, Mass. General Hospital, Harvard Medical School
Co-authored papers 11
Miguel Ramalho-Santos
University of Toronto
Co-authored papers 10
Xiaole Shirley Liu
Co-authored papers 8
Aaron Diaz
University of California san francisco
Co-authored papers 8
Raymond J Cho
University of California san francisco
Co-authored papers 5
Wei Li
Co-authored papers 4
Abhinav Nellore
Oregon Health & Science University
Co-authored papers 4
Myles Brown
Co-authored papers 3
Xinmin Zhang
Co-authored papers 3
Tali Mazor
Co-authored papers 3
Jason S Carroll
Co-authored papers 3
Adam B Olshen
12224University of California san francisco
Co-authored papers 3
Annette M Molinaro
Co-authored papers 3
Laurence E Court
The University of Texas MD Anderson Cancer Center
Co-authored papers 3
Brett E Johnson
Co-authored papers 3
Lionel Larue
Institut Curie, PSL Research University, INSERM U1021
Co-authored papers 2
Anthony V D'Amico
Duke University Medical Center
Co-authored papers 2
Mitchel S Berger
University of California san francisco
Co-authored papers 2
Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 2
Barry S Taylor
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Richard M Weinshilboum
Mayo Clinic
Co-authored papers 2
Thomas R Gingeras
Stanley Institute for Cognitive Genomics
Co-authored papers 2
Jerry Lee
Co-authored papers 2
Jennifer A Wargo
Co-authored papers 2
William A Weiss
University of California san francisco
Co-authored papers 2
Saurabh Sinha
Georgia Institute of Technology
Co-authored papers 2
Levi A Garraway
Broad Institute of Harvard and MIT
Co-authored papers 2
Daniel A Lim
University of California san francisco
Co-authored papers 2
Daniel G Anderson
Co-authored papers 2
Release 1.2