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Author Details

Evgeniy V Petrotchenko
Lady Davis Institute for Medical Research, Jewish General Hospital, McGill University
1998
61
30
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37781807A Metabolomics Analysis of a Novel Phenotype of Older Adults at Higher Risk of Dementia.J Alzheimers Dis2024
37468754Amino acid analysis for peptide quantitation using reversed-phase liquid chromatography combined with multiple reaction monitoring mass spectrometry.Anal Bioanal Chem2023
37526474Determination of Protein Monoclonal-Antibody Epitopes by a Combination of Structural Proteomics Methods.J Proteome Res2023
37115698Pressure overload induces ISG15 to facilitate adverse ventricular remodeling and promote heart failure.J Clin Invest2023
34968047Protein Chemistry Combined with Mass Spectrometry for Protein Structure Determination.Chem Rev2022
35434660A protocol for identifying the binding sites of small molecules on the cystic fibrosis transmembrane conductance regulator (CFTR) protein.STAR Protoc2022
34142049Identification of binding sites for ivacaftor on the cystic fibrosis transmembrane conductance regulator.iScience2021
33819634Crystallographic analysis of TarI and TarJ, a cytidylyltransferase and reductase pair for CDP-ribitol synthesis in Staphylococcus aureus wall teichoic acid biogenesis.J Struct Biol2021
34482645Structure of prion β-oligomers as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations.Proteomics2021
33065067Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.Structure2020
32051233Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker.Mol Cell Proteomics2020
31683063Ligand-induced disorder-to-order transitions characterized by structural proteomics and molecular dynamics simulations.J Proteomics2020
30917118Conformational ensemble of native α-synuclein in solution as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations.PLoS Comput Biol2019
31628033Insight into the Structure of the "Unstructured" Tau Protein.Structure2019
31601272MeCP2-E1 isoform is a dynamically expressed, weakly DNA-bound protein with different protein and DNA interactions compared to MeCP2-E2.Epigenetics Chromatin2019
31045356First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.Anal Chem2019
29336549Top-Down Hydrogen-Deuterium Exchange Analysis of Protein Structures Using Ultraviolet Photodissociation.Anal Chem2018
28695211Solving protein structures using short-distance cross-linking constraints as a guide for discrete molecular dynamics simulations.Sci Adv2017
29036638The basic tilted helix bundle domain of the prolyl isomerase FKBP25 is a novel double-stranded RNA binding module.Nucleic Acids Res2017
26787517Protein unfolding as a switch from self-recognition to high-affinity client binding.Nat Commun2016
28955874Expression and purification of the full murine NPM2 and study of its interaction with protamines and histones.Biochem Biophys Rep2016
26931439The novel isotopically coded short-range photo-reactive crosslinker 2,4,6-triazido-1,3,5-triazine (TATA) for studying protein structures.J Proteomics2016
25192908Isotopically-coded short-range hetero-bifunctional photo-reactive crosslinkers for studying protein structure.J Proteomics2015
26162650HDX match software for the data analysis of top-down ECD-FTMS hydrogen/deuterium exchange experiments.J Am Soc Mass Spectrom2015
25684576Structure of EspB from the ESX-1 type VII secretion system and insights into its export mechanism.Structure2015
25652824Architecture of the RNA polymerase II-Mediator core initiation complex.Nature2015
25752848Comprehensive identification of disulfide bonds using non-specific proteinase K digestion and CID-cleavable crosslinking analysis methodology for Orbitrap LC/ESI-MS/MS data.Methods2015
24497545Super Spy variants implicate flexibility in chaperone action.Elife2014
25501944DXMSMS Match Program for Automated Analysis of LC-MS/MS Data Obtained Using Isotopically Coded CID-Cleavable Cross-Linking Reagents.Curr Protoc Bioinformatics2014
24972318(14)N(15)N DXMSMS Match program for the automated analysis of LC/ESI-MS/MS crosslinking data from experiments using (15)N metabolically labeled proteins.J Proteomics2014
24985773Modern mass spectrometry-based structural proteomics.Adv Protein Chem Struct Biol2014
24840943The prolyl isomerase, FKBP25, interacts with RNA-engaged nucleolin and the pre-60S ribosomal subunit.RNA2014
24792007Analysis of protein structure by cross-linking combined with mass spectrometry.Methods Mol Biol2014
24895266Application of a fast sorting algorithm to the assignment of mass spectrometric cross-linking data.Proteomics2014
24316355Using isotopically-coded hydrogen peroxide as a surface modification reagent for the structural characterization of prion protein aggregates.J Proteomics2014
24354799"Out-gel" tryptic digestion procedure for chemical cross-linking studies with mass spectrometric detection.J Proteome Res2014
23085224Using multiple structural proteomics approaches for the characterization of prion proteins.J Proteomics2013
23939621Model of the Mediator middle module based on protein cross-linking.Nucleic Acids Res2013
23511632Structural and biochemical characterization of Plasmodium falciparum 12 (Pf12) reveals a unique interdomain organization and the potential for an antiparallel arrangement with Pf41.J Biol Chem2013
22144686MeCP2 binds to nucleosome free (linker DNA) regions and to H3K9/H3K27 methylated nucleosomes in the brain.Nucleic Acids Res2012
22438564Use of proteinase K nonspecific digestion for selective and comprehensive identification of interpeptide cross-links: application to prion proteins.Mol Cell Proteomics2012
22641729Mass spectrometry-based structural proteomics.Eur J Mass Spectrom (Chichester)2012
20622150An isotopically coded CID-cleavable biotinylated cross-linker for structural proteomics.Mol Cell Proteomics2011
21603587Mass spectrometric analysis and mutagenesis predict involvement of multiple cysteines in redox regulation of the skeletal muscle ryanodine receptor ion channel complex.Res Rep Biol2011
20050626Use of a combination of isotopically coded cross-linkers and isotopically coded N-terminal modification reagents for selective identification of inter-peptide crosslinks.Anal Chem2010
20730915Crosslinking combined with mass spectrometry for structural proteomics.Mass Spectrom Rev2010
20109223ICC-CLASS: isotopically-coded cleavable crosslinking analysis software suite.BMC Bioinformatics2010
18838738BiPS, a photocleavable, isotopically coded, fluorescent cross-linker for structural proteomics.Mol Cell Proteomics2009
17178718Inhibition of APCCdh1 activity by Cdh1/Acm1/Bmh1 ternary complex formation.J Biol Chem2007
16492733Combined top-down and bottom-up proteomics identifies a phosphorylation site in stem-loop-binding proteins that contributes to high-affinity RNA binding.Proc Natl Acad Sci U S A2006
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Collaborators

McGill University
Co-authored papers 51
Pennsylvania State University College of Medicine
Co-authored papers 7
University of Victoria
Co-authored papers 3
University of California (Davis)
Co-authored papers 3
University of Alberta
Co-authored papers 3
ETH Zurich
Co-authored papers 2
Institute of Chemistry, University of Campinas
Co-authored papers 2
University of Antwerp, University of Leeds
Co-authored papers 2
National Institute of Biological Sciences
Co-authored papers 2
Max-Planck Institute of Biochemistry
Co-authored papers 2
The A. Silberman Institute of Life Sciences, The Hebrew University of Jerusalem
Co-authored papers 2
University of Calgary, 0 Hospital Drive NW
Co-authored papers 2
University of California Irvine
Co-authored papers 2
University of Konstanz Universitatsstrasse 10
Co-authored papers 2
Institute for Systems Biology
Co-authored papers 2
Utrecht Institute for Pharmaceutical Sciences, Utrecht University
Co-authored papers 2
The University of British Columbia
Co-authored papers 2
Institute of Life Sciences, The Hebrew University
Co-authored papers 2
Institute of Microbiology of the CAS
Co-authored papers 2
Institute for Biotechnology, Technical University Berlin
Co-authored papers 2
Center for Structural Mass Spectrometry, Martin Luther University Halle-Wittenberg
Co-authored papers 2
Institute for Systems Biology
Co-authored papers 2
Johannes Gutenberg University Mainz
Co-authored papers 2
and Pharmacy, Freie Universitat Berlin
Co-authored papers 2
Utrecht University
Co-authored papers 2
IMP-Institute of Molecular Pathology
Co-authored papers 2
University of California San Francisco
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Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
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Graduate School of Pharmaceutical Sciences, Kyoto University
Co-authored papers 1