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Author Details

Alexander V Favorov
Johns Hopkins School of Medicine
1999
92
24
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37080163Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces.Cell Syst2023
37752648[Association of Polymorphic Genome Variants in the 2q32.1 Locus with the Development of Vasovagal Syncope].Mol Biol (Mosk)2023
37080163Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces.Cell Syst2023
37752648[Association of Polymorphic Genome Variants in the 2q32.1 Locus with the Development of Vasovagal Syncope].Mol Biol (Mosk)2023
36052064Deconvolution of B cell receptor repertoire in multiple sclerosis patients revealed a delay in tBreg maturation.Front Immunol2022
36230586Investigation of the Role of PUFA Metabolism in Breast Cancer Using a Rank-Based Random Forest Algorithm.Cancers (Basel)2022
36052064Deconvolution of B cell receptor repertoire in multiple sclerosis patients revealed a delay in tBreg maturation.Front Immunol2022
36694905Multiple Sclerosis Is Associated with Immunoglobulin Germline Gene Variation of Transitional B Cells.Acta Naturae2022
36694905Multiple Sclerosis Is Associated with Immunoglobulin Germline Gene Variation of Transitional B Cells.Acta Naturae2022
36230586Investigation of the Role of PUFA Metabolism in Breast Cancer Using a Rank-Based Random Forest Algorithm.Cancers (Basel)2022
33408119Newly Identified Members of FGFR1 Splice Variants Engage in Cross-talk with AXL/AKT Axis in Salivary Adenoid Cystic Carcinoma.Cancer Res2021
35474897Spatial correlation statistics enable transcriptome-wide characterization of RNA structure binding.Cell Rep Methods2021
33491650Supervised mutational signatures for obesity and other tissue-specific etiological factors in cancer.Elife2021
33980847Landscape of allele-specific transcription factor binding in the human genome.Nat Commun2021
33408119Newly Identified Members of FGFR1 Splice Variants Engage in Cross-talk with AXL/AKT Axis in Salivary Adenoid Cystic Carcinoma.Cancer Res2021
35474897Spatial correlation statistics enable transcriptome-wide characterization of RNA structure binding.Cell Rep Methods2021
33491650Supervised mutational signatures for obesity and other tissue-specific etiological factors in cancer.Elife2021
33980847Landscape of allele-specific transcription factor binding in the human genome.Nat Commun2021
32164487Chromatin structure regulates cancer-specific alternative splicing events in primary HPV-related oropharyngeal squamous cell carcinoma.Epigenetics2020
32079618Recounting the FANTOM CAGE-Associated Transcriptome.Genome Res2020
31850594Rational genomic optimization of DNA detection for human papillomavirus type 16 in head and neck squamous cell carcinoma.Head Neck2020
32010139Protective Allele for Multiple Sclerosis HLA-DRB1*01:01 Provides Kinetic Discrimination of Myelin and Exogenous Antigenic Peptides.Front Immunol2020
32164487Chromatin structure regulates cancer-specific alternative splicing events in primary HPV-related oropharyngeal squamous cell carcinoma.Epigenetics2020
32392348Matrix factorization and transfer learning uncover regulatory biology across multiple single-cell ATAC-seq data sets.Nucleic Acids Res2020
32929079Senescence and entrenchment in evolution of amino acid sites.Nat Commun2020
33015029Extracellular Vesicles Released by Tumor Endothelial Cells Spread Immunosuppressive and Transforming Signals Through Various Recipient Cells.Front Cell Dev Biol2020
32848210HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers.Oncogene2020
32079618Recounting the FANTOM CAGE-Associated Transcriptome.Genome Res2020
32010139Protective Allele for Multiple Sclerosis HLA-DRB1*01:01 Provides Kinetic Discrimination of Myelin and Exogenous Antigenic Peptides.Front Immunol2020
31850594Rational genomic optimization of DNA detection for human papillomavirus type 16 in head and neck squamous cell carcinoma.Head Neck2020
33015029Extracellular Vesicles Released by Tumor Endothelial Cells Spread Immunosuppressive and Transforming Signals Through Various Recipient Cells.Front Cell Dev Biol2020
32848210HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers.Oncogene2020
32929079Senescence and entrenchment in evolution of amino acid sites.Nat Commun2020
32392348Matrix factorization and transfer learning uncover regulatory biology across multiple single-cell ATAC-seq data sets.Nucleic Acids Res2020
28968771VirGenA: a reference-based assembler for variable viral genomes.Brief Bioinform2019
31737053What Do Neighbors Tell About You: The Local Context of Cis-Regulatory Modules Complicates Prediction of Regulatory Variants.Front Genet2019
31636280Differentially Methylated Super-Enhancers Regulate Target Gene Expression in Human Cancer.Sci Rep2019
31578251Allele-specific nonstationarity in evolution of influenza A virus surface proteins.Proc Natl Acad Sci U S A2019
28968771VirGenA: a reference-based assembler for variable viral genomes.Brief Bioinform2019
31142745Publisher Correction: Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.Nat Commun2019
31337651Differential Variation Analysis Enables Detection of Tumor Heterogeneity Using Single-Cell RNA-Sequencing Data.Cancer Res2019
31097695Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.Nat Commun2019
31636280Differentially Methylated Super-Enhancers Regulate Target Gene Expression in Human Cancer.Sci Rep2019
31737053What Do Neighbors Tell About You: The Local Context of Cis-Regulatory Modules Complicates Prediction of Regulatory Variants.Front Genet2019
31578251Allele-specific nonstationarity in evolution of influenza A virus surface proteins.Proc Natl Acad Sci U S A2019
31337651Differential Variation Analysis Enables Detection of Tumor Heterogeneity Using Single-Cell RNA-Sequencing Data.Cancer Res2019
31097695Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.Nat Commun2019
31142745Publisher Correction: Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.Nat Commun2019
29342249Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer.Bioinformatics2018
28968850Epigenetic regulation of gene expression in cancer: techniques, resources and analysis.Brief Funct Genomics2018
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Collaborators

Elana J Fertig
Johns Hopkins University School of Medicine
Co-authored papers 28
Ludmila Danilova
Bloomberg-Kimmel Immunotherapy Institute, Johns Hopkins University School of Medicine
Co-authored papers 17
Daria A Gaykalova
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 17
Michael F Ochs
The College of New Jersey
Co-authored papers 15
Andrey A Mironov
Lomonosov Moscow State University
Co-authored papers 14
Theresa Guo
Moores Cancer Center, University of California
Co-authored papers 12
Joseph A Califano
University of California
Co-authored papers 12
Vsevolod J Makeev
Vavilov Institute of General Genetics, Russian Academy of Sciences
Co-authored papers 11
Michael J Considine
Johns Hopkins University School of Medicine
Co-authored papers 10
Genevieve L Stein-O'Brien
Johns Hopkins School of Medicine
Co-authored papers 8
Akihiro Sakai
Tokai University
Co-authored papers 6
Shuling Ren
Beijing Friendship Hospital, Capital Medical University
Co-authored papers 5
Mizuo Ando
University of Tokyo
Co-authored papers 5
Giovanni Parmigiani
Dana Farber Cancer Institute.
Co-authored papers 5
Patrick K Ha
University of California San Francisco
Co-authored papers 5
Sarah J Wheelan
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 5
Takahito Fukusumi
Osaka University Graduate School of Medicine
Co-authored papers 5
Chao Liu
Xiangya Hospital, Central South University
Co-authored papers 5
Ivan V Kulakovskiy
Vavilov Institute of General Genetics, Russian Academy of Sciences
Co-authored papers 5
Kathleen M Fisch
Center for Computational Biology and Bioinformatics, University of California
Co-authored papers 4
Wayne M Koch
Johns Hopkins University School of Medicine
Co-authored papers 4
Zubair Khan
University of Texas at Houston Health Science Center
Co-authored papers 4
Yulia A Medvedeva
Research Center of Biotechnology RAS, Russian Academy of Sciences
Co-authored papers 4
Guorong Xu
Chinese University of Hong Kong
Co-authored papers 4
Pablo Tamayo
University of California San Diego
Co-authored papers 3
Justin A Bishop
UT Southwestern Medical Center
Co-authored papers 3
Leslie Cope
Johns Hopkins University School of Medicine
Co-authored papers 3
John Pang
University of Washington
Co-authored papers 3
Yuki Saito
Niigata Prefectural Tokamachi Hospital.
Co-authored papers 3
Sunny Haft
Moores Cancer Center, University of California
Co-authored papers 3
Release 1.2