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Author Details

Yehoshua Perl
New Jersey Institute of Technology
1996
97
20
PMIDPaper TitleJournal TitlePublished Year
36829139Mining of EHR for interface terminology concepts for annotating EHRs of COVID patients.BMC Med Inform Decis Mak2023
37161560Big knowledge visualization of the COVID-19 CIDO ontology evolution.BMC Med Inform Decis Mak2023
35486806Risk Factors Associated With SARS-CoV-2 Breakthrough Infections in Fully mRNA-Vaccinated Individuals: Retrospective Analysis.JMIR Public Health Surveill2022
34224898Visual comprehension and orientation into the COVID-19 CIDO ontology.J Biomed Inform2021
32308894Training a Convolutional Neural Network with Terminology Summarization Data Improves SNOMED CT Enrichment.AMIA Annu Symp Proc2020
33098987Concept placement using BERT trained by transforming and summarizing biomedical ontology structure.J Biomed Inform2020
33319713Outlier concepts auditing methodology for a large family of biomedical ontologies.BMC Med Inform Decis Mak2020
33319709Missing lateral relationships in top-level concepts of an ontology.BMC Med Inform Decis Mak2020
32766692A review of auditing techniques for the Unified Medical Language System.J Am Med Inform Assoc2020
32308910Transfer Learning from BERT to Support Insertion of New Concepts into SNOMED CT.AMIA Annu Symp Proc2020
30815117Using Convolutional Neural Networks to Support Insertion of New Concepts into SNOMED CT.AMIA Annu Symp Proc2018
30205171Quality assurance of biomedical terminologies and ontologies.J Biomed Inform2018
29852316Complex overlapping concepts: An effective auditing methodology for families of similarly structured BioPortal ontologies.J Biomed Inform2018
30815158Overlapping Complex Concepts Have More Commission Errors, Especially in Intensive Terminology Auditing.AMIA Annu Symp Proc2018
27750400Introducing the Big Knowledge to Use (BK2U) challenge.Ann N Y Acad Sci2017
28269894Tracking the Remodeling of SNOMED CT's Bacterial Infectious Diseases.AMIA Annu Symp Proc2017
28244549Relating Complexity and Error Rates of Ontology Concepts. More Complex NCIt Concepts Have More Errors.Methods Inf Med2017
28215561Analyzing structural changes in SNOMED CT's Bacterial infectious diseases using a visual semantic delta.J Biomed Inform2017
29375930Auditing the Assignments of Top-Level Semantic Types in the UMLS Semantic Network to UMLS Concepts.Proceedings (IEEE Int Conf Bioinformatics Biomed)2017
29158885Taxonomy-Based Approaches to Quality Assurance of Ontologies.J Healthc Eng2017
29295411Correcting Ontology Errors Simplifies Visual Complexity.Stud Health Technol Inform2017
29295246Summarizing an Ontology: A "Big Knowledge" Coverage Approach.Stud Health Technol Inform2017
28723580Quality assurance of chemical ingredient classification for the National Drug File - Reference Terminology.J Biomed Inform2017
28532962From SNOMED CT to Uberon: Transferability of evaluation methodology between similarly structured ontologies.Artif Intell Med2017
28583809An empirical analysis of ontology reuse in BioPortal.J Biomed Inform2017
26988001Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies.J Biomed Inform2016
27301779Quality assurance of the gene ontology using abstraction networks.J Bioinform Comput Biol2016
27345947A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies.J Biomed Inform2016
25332354A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships.J Am Med Inform Assoc2015
26260003Structural measures to track the evolution of SNOMED CT hierarchies.J Biomed Inform2015
26958234Drug-drug Interaction Discovery Using Abstraction Networks for "National Drug File - Reference Terminology" Chemical Ingredients.AMIA Annu Symp Proc2015
26048076Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network.J Biomed Inform2015
25890687Abstraction networks for terminologies: Supporting management of "big knowledge".Artif Intell Med2015
25336594Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies.J Am Med Inform Assoc2015
25422719Sculpting the UMLS Refined Semantic Network.Online J Public Health Inform2014
23041716Rule-based support system for multiple UMLS semantic type assignments.J Biomed Inform2013
24551393Scalability of abstraction-network-based quality assurance to large SNOMED hierarchies.AMIA Annu Symp Proc2013
24551360A family-based framework for supporting quality assurance of biomedical ontologies in BioPortal.AMIA Annu Symp Proc2013
24551319Identifying inconsistencies in SNOMED CT problem lists using structural indicators.AMIA Annu Symp Proc2013
23920662Identifying problematic concepts in SNOMED CT using a lexical approach.Stud Health Technol Inform2013
23602702The readiness of SNOMED problem list concepts for meaningful use of electronic health records.Artif Intell Med2013
21925287Overcoming an obstacle in expanding a UMLS semantic type extent.J Biomed Inform2012
26870837Clinical Clarity versus Terminological Order - The Readiness of SNOMED CT Concept Descriptors for Primary Care.MIXHS 12 (2012)2012
23304341Deriving an abstraction network to support quality assurance in OCRe.AMIA Annu Symp Proc2012
23304293New abstraction networks and a new visualization tool in support of auditing the SNOMED CT content.AMIA Annu Symp Proc2012
22687822A study of terminology auditors' performance for UMLS semantic type assignments.J Biomed Inform2012
22577759A chemical specialty semantic network for the Unified Medical Language System.J Cheminform2012
21907827Auditing complex concepts of SNOMED using a refined hierarchical abstraction network.J Biomed Inform2012
21878396Abstraction of complex concepts with a refined partial-area taxonomy of SNOMED.J Biomed Inform2012
21646001Resolution of redundant semantic type assignments for organic chemicals in the UMLS.Artif Intell Med2011
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Collaborators

James Geller
New Jersey Institute of Technology
Co-authored papers 66
Gai Elhanan
NV Center for Genomic Medicine, Desert Research Institute
Co-authored papers 26
Christopher Ochs
New Jersey Institute of Technology, University Heights
Co-authored papers 25
James J Cimino
Informatics Institute, University of Alabama
Co-authored papers 13
George Hripcsak
Columbia University
Co-authored papers 13
Hao Liu
Columbia University Irving Medical Center
Co-authored papers 9
Kent A Spackman
Oregon Health & Science University
Co-authored papers 5
Mark A Musen
Stanford Center for Biomedical Informatics Research, Stanford University
Co-authored papers 4
Samson W Tu
Stanford University
Co-authored papers 2
Yongqun He
University of Michigan Medical School ann arbor
Co-authored papers 2
Natalya F Noy
Stanford Center for Biomedical Informatics Research, Stanford University
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Ontopro LLC
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Jane Lomax
Wellcome Sanger Institute
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Melissa A Haendel
American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison
Co-authored papers 1
Jose L V Mejino
Department of Biological Structure University of Washington
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James R Rogers
Columbia University
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Karthik Natarajan
Columbia University Irving Medical Center
Co-authored papers 1
Casey N Ta
Columbia University Irving Medical Center
Co-authored papers 1
Melissa A Haendel
Co-authored papers 1
Mei Liu
University of Kansas Medical Center
Co-authored papers 1
Matthew H Brush
University of Colorado Anschutz Medical Campus
Co-authored papers 1
Ida Sim
University of California San Francisco
Co-authored papers 1
Chunhua Weng
Columbia University Irving Medical Center
Co-authored papers 1
Guo-Qiang Zhang
China-Japan Friendship Hospital
Co-authored papers 1
Ronald Cornet
University of Amsterdam
Co-authored papers 1
Licong Cui
The University of Texas Health Science Center at Houston
Co-authored papers 1
Zhi Wei
Co-authored papers 1
Christopher J Mungall
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 1
Jiang Bian
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