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Author Details

Aedin C Culhane
Dana-Farber Cancer Institute & Harvard School of Public Health
1996
77
42
PMIDPaper TitleJournal TitlePublished Year
36681709Correspondence analysis for dimension reduction, batch integration, and visualization of single-cell RNA-seq data.Sci Rep2023
37839622Health diplomacy in action: The cancer legacy of the Good Friday Agreement.J Cancer Policy2023
37624866Curated single cell multimodal landmark datasets for R/Bioconductor.PLoS Comput Biol2023
37237081Genome-scale functional genomics identify genes preferentially essential for multiple myeloma cells compared to other neoplasias.Nat Cancer2023
36681709Correspondence analysis for dimension reduction, batch integration, and visualization of single-cell RNA-seq data.Sci Rep2023
37624866Curated single cell multimodal landmark datasets for R/Bioconductor.PLoS Comput Biol2023
37839622Health diplomacy in action: The cancer legacy of the Good Friday Agreement.J Cancer Policy2023
37237081Genome-scale functional genomics identify genes preferentially essential for multiple myeloma cells compared to other neoplasias.Nat Cancer2023
32859606Pleiotropic Mechanisms Drive Endocrine Resistance in the Three-Dimensional Bone Microenvironment.Cancer Res2021
34272262Characteristics and Outcomes of Over 300,000 Patients with COVID-19 and History of Cancer in the United States and Spain.Cancer Epidemiol Biomarkers Prev2021
34253920Genome-scale screens identify factors regulating tumor cell responses to natural killer cells.Nat Genet2021
34353350Community-wide hackathons to identify central themes in single-cell multi-omics.Genome Biol2021
32859606Pleiotropic Mechanisms Drive Endocrine Resistance in the Three-Dimensional Bone Microenvironment.Cancer Res2021
33417832An Embryonic Diapause-like Adaptation with Suppressed Myc Activity Enables Tumor Treatment Persistence.Cancer Cell2021
33406420Functional Genomics Identify Distinct and Overlapping Genes Mediating Resistance to Different Classes of Heterobifunctional Degraders of Oncoproteins.Cell Rep2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34433496Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics.Genome Biol2021
35118195Anti-CAIX BBζ CAR4/8 T cells exhibit superior efficacy in a ccRCC mouse model.Mol Ther Oncolytics2021
35118195Anti-CAIX BBζ CAR4/8 T cells exhibit superior efficacy in a ccRCC mouse model.Mol Ther Oncolytics2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34433496Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics.Genome Biol2021
34353350Community-wide hackathons to identify central themes in single-cell multi-omics.Genome Biol2021
34272262Characteristics and Outcomes of Over 300,000 Patients with COVID-19 and History of Cancer in the United States and Spain.Cancer Epidemiol Biomarkers Prev2021
34253920Genome-scale screens identify factors regulating tumor cell responses to natural killer cells.Nat Genet2021
33406420Functional Genomics Identify Distinct and Overlapping Genes Mediating Resistance to Different Classes of Heterobifunctional Degraders of Oncoproteins.Cell Rep2021
33417832An Embryonic Diapause-like Adaptation with Suppressed Myc Activity Enables Tumor Treatment Persistence.Cancer Cell2021
32864627Risk of hydroxychloroquine alone and in combination with azithromycin in the treatment of rheumatoid arthritis: a multinational, retrospective study.Lancet Rheumatol2020
31871106The Impact of Stroma Admixture on Molecular Subtypes and Prognostic Gene Signatures in Serous Ovarian Cancer.Cancer Epidemiol Biomarkers Prev2020
32656082Impact of Data Preprocessing on Integrative Matrix Factorization of Single Cell Data.Front Oncol2020
32864627Risk of hydroxychloroquine alone and in combination with azithromycin in the treatment of rheumatoid arthritis: a multinational, retrospective study.Lancet Rheumatol2020
33024121Deep phenotyping of 34,128 adult patients hospitalised with COVID-19 in an international network study.Nat Commun2020
31871106The Impact of Stroma Admixture on Molecular Subtypes and Prognostic Gene Signatures in Serous Ovarian Cancer.Cancer Epidemiol Biomarkers Prev2020
32656082Impact of Data Preprocessing on Integrative Matrix Factorization of Single Cell Data.Front Oncol2020
33024121Deep phenotyping of 34,128 adult patients hospitalised with COVID-19 in an international network study.Nat Commun2020
31433971The Immune Landscape of Cancer.Immunity2019
31433971The Immune Landscape of Cancer.Immunity2019
30143323Enter the Matrix: Factorization Uncovers Knowledge from Omics.Trends Genet2018
30254159BRCA1-IRIS promotes human tumor progression through PTEN blockade and HIF-1α activation.Proc Natl Acad Sci U S A2018
30143323Enter the Matrix: Factorization Uncovers Knowledge from Omics.Trends Genet2018
30254159BRCA1-IRIS promotes human tumor progression through PTEN blockade and HIF-1α activation.Proc Natl Acad Sci U S A2018
28894018In Reply.Oncologist2017
28894018In Reply.Oncologist2017
29092936Software for the Integration of Multiomics Experiments in Bioconductor.Cancer Res2017
28220024Molecular Subtypes Improve Prognostic Value of International Metastatic Renal Cell Carcinoma Database Consortium Prognostic Model.Oncologist2017
28220024Molecular Subtypes Improve Prognostic Value of International Metastatic Renal Cell Carcinoma Database Consortium Prognostic Model.Oncologist2017
29092936Software for the Integration of Multiomics Experiments in Bioconductor.Cancer Res2017
26969681Dimension reduction techniques for the integrative analysis of multi-omics data.Brief Bioinform2016
26969681Dimension reduction techniques for the integrative analysis of multi-omics data.Brief Bioinform2016
27008008Integrative Exploratory Analysis of Two or More Genomic Datasets.Methods Mol Biol2016
26546296MECP2 Is a Frequently Amplified Oncogene with a Novel Epigenetic Mechanism That Mimics the Role of Activated RAS in Malignancy.Cancer Discov2016
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Collaborators

John Quackenbush
Harvard T. H. Chan School of Public Health
Co-authored papers 19
Benjamin Haibe-Kains
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 12
William M Gallagher
All-Island Cancer Research Institute, UCD Conway Institute, University College Dublin
Co-authored papers 8
Levi Waldron
City University of New York School of Public Health
Co-authored papers 7
Vincent J Carey
Brigham and Women's Hospital, Harvard Medical School
Co-authored papers 5
Toni K Choueiri
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Aviad Tsherniak
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Co-authored papers 4
Michael J Birrer
Co-authored papers 4
Razvan Sultana
John A. Burns School of Medicine, University of Hawaii at Manoa
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Donal J Brennan
National Centre for Peritoneal Malignancy, Mater Misericordiae University Hospital
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Christian Reich
OHDSI Center at The Roux Institute, Northeastern University
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Matthew Spotnitz
Columbia University Irving Medical Center
Co-authored papers 3
Genevieve L Stein-O'Brien
Johns Hopkins School of Medicine
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Karin Jirstr??m
Lund University
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Curtis Huttenhower
Broad Institute of MIT and Harvard
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Daniel Prieto-Alhambra
University of Oxford
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Kristine E Lynch
University of Utah Health
Co-authored papers 3
Dario Righelli
University of Padova
Co-authored papers 3
Casey S Greene
Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine
Co-authored papers 3
Talita Duarte-Salles
Erasmus University Medical Center
Co-authored papers 3
Markus Riester
Novartis Institutes for BioMedical Research
Co-authored papers 3
Martin Morgan
Roswell Park Comprehensive Cancer Center
Co-authored papers 3
Marcel Ramos
Graduate School of Public Health and Health Policy, City University of New York
Co-authored papers 3
Darran P O'Connor
UCD Conway Institute, University College Dublin
Co-authored papers 3
Scott L DuVall
University of Utah
Co-authored papers 3
Ricard Argelaguet
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Patrick B Ryan
Columbia University Irving Medical Center
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William C Hahn
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Fred Nyberg
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Michael Matheny
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Release 1.2