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Author Details

Shyam Prabhakar
Genome Institute of Singapore (GIS)
2004
76
39
Gloria M Sheynkman (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37592035Single-nucleotide variant calling in single-cell sequencing data with Monopogen.Nat Biotechnol2024
37592035Single-nucleotide variant calling in single-cell sequencing data with Monopogen.Nat Biotechnol2024
36658435The Singapore National Precision Medicine Strategy.Nat Genet2023
36857629A single-cell atlas identifies pretreatment features of primary imatinib resistance in chronic myeloid leukemia.Blood2023
36536257Publisher Correction: Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors.Nat Genet2023
36918265Comprehensive molecular phenotyping of <i>ARID1A</i>-deficient gastric cancer reveals pervasive epigenomic reprogramming and therapeutic opportunities.Gut2023
36658435The Singapore National Precision Medicine Strategy.Nat Genet2023
36857629A single-cell atlas identifies pretreatment features of primary imatinib resistance in chronic myeloid leukemia.Blood2023
36918265Comprehensive molecular phenotyping of <i>ARID1A</i>-deficient gastric cancer reveals pervasive epigenomic reprogramming and therapeutic opportunities.Gut2023
36536257Publisher Correction: Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors.Nat Genet2023
35038898Human Nasal Epithelial Cells Sustain Persistent SARS-CoV-2 Infection <i>In Vitro</i>, despite Eliciting a Prolonged Antiviral Response.mBio2022
35773407Single-cell and bulk transcriptome sequencing identifies two epithelial tumor cell states and refines the consensus molecular classification of colorectal cancer.Nat Genet2022
36056172Integrative multi-omics landscape of fluoxetine action across 27 brain regions reveals global increase in energy metabolism and region-specific chromatin remodelling.Mol Psychiatry2022
36056160Author Correction: Histone acetylome-wide associations in immune cells from individuals with active Mycobacterium tuberculosis infection.Nat Microbiol2022
35038898Human Nasal Epithelial Cells Sustain Persistent SARS-CoV-2 Infection <i>In Vitro</i>, despite Eliciting a Prolonged Antiviral Response.mBio2022
35102304Histone acetylome-wide associations in immune cells from individuals with active Mycobacterium tuberculosis infection.Nat Microbiol2022
35773407Single-cell and bulk transcriptome sequencing identifies two epithelial tumor cell states and refines the consensus molecular classification of colorectal cancer.Nat Genet2022
36056172Integrative multi-omics landscape of fluoxetine action across 27 brain regions reveals global increase in energy metabolism and region-specific chromatin remodelling.Mol Psychiatry2022
36056160Author Correction: Histone acetylome-wide associations in immune cells from individuals with active Mycobacterium tuberculosis infection.Nat Microbiol2022
35102304Histone acetylome-wide associations in immune cells from individuals with active Mycobacterium tuberculosis infection.Nat Microbiol2022
34320202RCA2: a scalable supervised clustering algorithm that reduces batch effects in scRNA-seq data.Nucleic Acids Res2021
33845760scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data.BMC Bioinformatics2021
34320202RCA2: a scalable supervised clustering algorithm that reduces batch effects in scRNA-seq data.Nucleic Acids Res2021
34788620Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing.Cell Rep2021
34732136Transposable elements that have recently been mobile in the human genome.BMC Genomics2021
34615861DUBStepR is a scalable correlation-based feature selection method for accurately clustering single-cell data.Nat Commun2021
33845760scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data.BMC Bioinformatics2021
34615861DUBStepR is a scalable correlation-based feature selection method for accurately clustering single-cell data.Nat Commun2021
34788620Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing.Cell Rep2021
34732136Transposable elements that have recently been mobile in the human genome.BMC Genomics2021
32451460Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer.Nat Genet2020
32259484Early Fate Defines Microglia and Non-parenchymal Brain Macrophage Development.Cell2020
32451460Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer.Nat Genet2020
32529949Epigenomes of Human Hearts Reveal New Genetic Variants Relevant for Cardiac Disease and Phenotype.Circ Res2020
32978376Integrative genomics identifies a convergent molecular subtype that links epigenomic with transcriptomic differences in autism.Nat Commun2020
32978376Integrative genomics identifies a convergent molecular subtype that links epigenomic with transcriptomic differences in autism.Nat Commun2020
32529949Epigenomes of Human Hearts Reveal New Genetic Variants Relevant for Cardiac Disease and Phenotype.Circ Res2020
32259484Early Fate Defines Microglia and Non-parenchymal Brain Macrophage Development.Cell2020
30523199Concurrent Single-Cell RNA and Targeted DNA Sequencing on an Automated Platform for Comeasurement of Genomic and Transcriptomic Signatures.Clin Chem2019
31645609Resistin expression in human monocytes is controlled by two linked promoter SNPs mediating NFKB p50/p50 binding and C-methylation.Sci Rep2019
30523199Concurrent Single-Cell RNA and Targeted DNA Sequencing on an Automated Platform for Comeasurement of Genomic and Transcriptomic Signatures.Clin Chem2019
31220268Genome-wide DNA methylation profiling identifies convergent molecular signatures associated with idiopathic and syndromic autism in post-mortem human brain tissue.Hum Mol Genet2019
31431463Pathogenic Epigenetic Consequences of Genetic Alterations in IDH-Wild-Type Diffuse Astrocytic Gliomas.Cancer Res2019
31015293Intrinsic mutant HTT-mediated defects in oligodendroglia cause myelination deficits and behavioral abnormalities in Huntington disease.Proc Natl Acad Sci U S A2019
30717603Robust CTCF-Based Chromatin Architecture Underpins Epigenetic Changes in the Heart Failure Stress-Gene Response.Circulation2019
31645609Resistin expression in human monocytes is controlled by two linked promoter SNPs mediating NFKB p50/p50 binding and C-methylation.Sci Rep2019
31431463Pathogenic Epigenetic Consequences of Genetic Alterations in IDH-Wild-Type Diffuse Astrocytic Gliomas.Cancer Res2019
31220268Genome-wide DNA methylation profiling identifies convergent molecular signatures associated with idiopathic and syndromic autism in post-mortem human brain tissue.Hum Mol Genet2019
31015293Intrinsic mutant HTT-mediated defects in oligodendroglia cause myelination deficits and behavioral abnormalities in Huntington disease.Proc Natl Acad Sci U S A2019
30717603Robust CTCF-Based Chromatin Architecture Underpins Epigenetic Changes in the Heart Failure Stress-Gene Response.Circulation2019
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Collaborators

Jeremie Poschmann
Co-authored papers 11
Edward M Rubin
Co-authored papers 10
Wenjie Sun
Co-authored papers 9
Len A Pennacchio
Lawrence Berkeley National Laboratory
Co-authored papers 6
Olivier Couronne
Co-authored papers 5
Jonathan Mill
University of Exeter Medical School, University of Exeter.
Co-authored papers 5
Veena Afzal
Co-authored papers 4
Chloe C Y Wong
Co-authored papers 4
Paul Robson
Co-authored papers 4
Daniel H Geschwind
University of California los angeles
Co-authored papers 4
Huck-Hui Ng
Co-authored papers 4
Ingrid Plajzer-Frick
Co-authored papers 3
Axel Visel
Co-authored papers 3
Jennifer A Akiyama
Co-authored papers 3
Chiea Chuen Khor
Co-authored papers 3
Neelroop N Parikshak
Co-authored papers 3
Woong-Yang Park
Samsung Genome Institute, Samsung Medical Center
Co-authored papers 3
James P Noonan
Co-authored papers 3
Evan E Eichler
University of Washington
Co-authored papers 2
Inna Dubchak
Lawrence Berkeley National Laboratory
Co-authored papers 2
Mark Dickson
Co-authored papers 2
Bing Lim
Co-authored papers 2
Joel Martin
Co-authored papers 2
Trevor Hawkins
Co-authored papers 2
Yuriy L Orlov
Co-authored papers 2
Nadav Ahituv
University of California san francisco
Co-authored papers 2
Xinwei She
Rosetta Inpharmatics LLC
Co-authored papers 2
Michael B Eisen
Howard Hughes Medical Institute, University of California Berkeley
Co-authored papers 2
Asaf Salamov
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
Michael J Gandal
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 2
Release 1.2