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Author Details

Halil Kilicoglu
University of Illinois Urbana-Champaign
2003
59
18
PMIDPaper TitleJournal TitlePublished Year
37952122Complementary and Integrative Health Information in the literature: its lexicon and named entity recognition.J Am Med Inform Assoc2024
36824778Chemical Entity Normalization for Successful Translational Development of Alzheimer's Disease and Dementia Therapeutics.Res Sq2023
37562729Methodology reporting improved over time in 176,469 randomized controlled trials.J Clin Epidemiol2023
37292731Repurposing Non-pharmacological Interventions for Alzheimer's Diseases through Link Prediction on Biomedical Literature.medRxiv2023
36973785A comment-driven evidence appraisal approach to promoting research findings into practice when only uncertain evidence is available.Health Res Policy Syst2023
37128457Methodological information extraction from randomized controlled trial publications: a pilot study.AMIA Annu Symp Proc2023
36933632Developing a Knowledge Graph for Pharmacokinetic Natural Product-Drug Interactions.J Biomed Inform2023
35850379Call for papers: Semantics-enabled biomedical literature analytics.J Biomed Inform2022
35709900Discovering novel drug-supplement interactions using SuppKG generated from the biomedical literature.J Biomed Inform2022
35854729Investigating the impact of weakly supervised data on text mining models of publication transparency: a case study on randomized controlled trials.AMIA Jt Summits Transl Sci Proc2022
35690782Is the future of peer review automated?BMC Res Notes2022
33432174Automated screening of COVID-19 preprints: can we help authors to improve transparency and reproducibility?Nat Med2021
33571675Drug repurposing for COVID-19 via knowledge graph completion.J Biomed Inform2021
33647518Toward assessing clinical trial publications for reporting transparency.J Biomed Inform2021
33564698Drug Repurposing for COVID-19 via Knowledge Graph Completion.ArXiv2021
34541578Attention-Gated Graph Convolutions for Extracting Drug Interaction Information from Drug Labels.ACM Trans Comput Healthc2021
32410573Broad-coverage biomedical relation extraction with SemRep.BMC Bioinformatics2020
32308816Non-Negative Matrix Factorization for Drug Repositioning: Experiments with the repoDB Dataset.AMIA Annu Symp Proc2020
30545491Expanding vocabularies for complementary and alternative medicine therapies.Int J Med Inform2019
31846471Menagerie: A text-mining tool to support animal-human translation in neurodegeneration research.PLoS One2019
31473364Towards a characterization of apparent contradictions in the biomedical literature using context analysis.J Biomed Inform2019
31534784Impact of peer review on discussion of study limitations and strength of claims in randomized trial reports: a before and after study.Res Integr Peer Rev2019
30753947Confirm or refute?: A comparative study on citation sentiment classification in clinical research publications.J Biomed Inform2019
28633401Biomedical text mining for research rigor and integrity: tasks, challenges, directions.Brief Bioinform2018
30587224Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing.J Biomed Semantics2018
29409442Semantic annotation of consumer health questions.BMC Bioinformatics2018
29718377Automatic recognition of self-acknowledged limitations in clinical research literature.J Am Med Inform Assoc2018
28838071Informatics Support for Basic Research in Biomedicine.ILAR J2017
28269888Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions.AMIA Annu Symp Proc2017
28678823Assigning factuality values to semantic relations extracted from biomedical research literature.PLoS One2017
27080229Sortal anaphora resolution to enhance relation extraction from biomedical literature.BMC Bioinformatics2016
26934708Bio-SCoRes: A Smorgasbord Architecture for Coreference Resolution in Biomedical Text.PLoS One2016
26122527The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs.J Biomed Inform2015
26958208An Ensemble Method for Spelling Correction in Consumer Health Questions.AMIA Annu Symp Proc2015
24448204Using semantic predications to uncover drug-drug interactions in clinical data.J Biomed Inform2014
25954411Automatically classifying question types for consumer health questions.AMIA Annu Symp Proc2014
25392688Exploiting Literature-derived Knowledge and Semantics to Identify Potential Prostate Cancer Drugs.Cancer Inform2014
24921649Augmenting microarray data with literature-based knowledge to enhance gene regulatory network inference.PLoS Comput Biol2014
23973273A methodology for extending domain coverage in SemRep.J Biomed Inform2013
24551389Automatically extracting clinically useful sentences from UpToDate to support clinicians' information needs.AMIA Annu Symp Proc2013
22759461Biological event composition.BMC Bioinformatics2012
23044550SemMedDB: a PubMed-scale repository of biomedical semantic predications.Bioinformatics2012
22177292U-Compare bio-event meta-service: compatible BioNLP event extraction services.BMC Bioinformatics2011
22185221Constructing a semantic predication gold standard from the biomedical literature.BMC Bioinformatics2011
20841778Combining relevance assignment with quality of the evidence to support guideline development.Stud Health Technol Inform2010
24311971Adapting Semantic Natural Language Processing Technology to Address Information Overload in Influenza Epidemic Management.J Am Soc Inf Sci Technol2010
18952929Towards automatic recognition of scientifically rigorous clinical research evidence.J Am Med Inform Assoc2009
19022398Automatic summarization of MEDLINE citations for evidence-based medical treatment: a topic-oriented evaluation.J Biomed Inform2009
18998881Toward automatic recognition of high quality clinical evidence.AMIA Annu Symp Proc2008
19025686Recognizing speculative language in biomedical research articles: a linguistically motivated perspective.BMC Bioinformatics2008
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Collaborators

Marcelo Fiszman
Pontifical Catholic University of Rio de Janeiro
Co-authored papers 23
Dina Demner-Fushman
Lister Hill National Center for Biomedical Communications
Co-authored papers 10
Rui Zhang
University of Minnesota
Co-authored papers 4
Kirk Roberts
Georgia Institute of Technology, National Library of Medicine, University of Texas Health Science Center at Houston, University of Texas at Dallas
Co-authored papers 4
Serguei Pakhomov
University of Minnesota
Co-authored papers 3
Guilherme Del Fiol
University of Utah
Co-authored papers 2
Sonya E Shooshan
National Institutes of Health
Co-authored papers 2
Laritza Rodriguez
National Institutes of Health
Co-authored papers 2
Yassine M'Rabet
Institut National de Recherche Et d'Analyse Physico-Chimique (INRAP)
Co-authored papers 2
Charles A Sneiderman
Lister Hill National Center for Biomedical Communications
Co-authored papers 2
Anita Bandrowski
university of california san diego
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Genevieve B Melton
University of Minnesota
Co-authored papers 2
Ramakanth Kavuluru
College of Medicine, University of Kentucky
Co-authored papers 2
Robert Brian Haynes
Health Information Research Unit, McMaster University
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Lucy Lu Wang
University of Washington, USA Allen Institute for AI
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Bridget T McInnes
Virginia Commonwealth University
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Bruce E Bray
University of Utah School of Medicine
Co-authored papers 1
Tiffany J Callahan
Columbia University
Co-authored papers 1
Sophia Ananiadou
Co-authored papers 1
Olivier Bodenreider
National Institutes of Health
Co-authored papers 1
Lawrence E Hunter
University of Colorado School of Medicine
Co-authored papers 1
Mariana Neves
Co-authored papers 1
Sandra L Kane-Gill
Department of Pharmacy and Therapeutics, School of Pharmacy, University of Pittsburgh
Co-authored papers 1
Willie J Rogers
National Institutes of Health
Co-authored papers 1
Filip Ginter
University of Turku
Co-authored papers 1
Rune Saetre
Co-authored papers 1
Jun'ichi Tsujii
Co-authored papers 1
Karin Verspoor
National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre
Co-authored papers 1
Mary F Paine
Washington State University
Co-authored papers 1
Fran??ois-Michel Lang
Co-authored papers 1
Release 1.2