Author details

Full Name

Chen-Hsiang Yeang

Affiliation

Institute of Statistical Science

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36812605	An integrated analysis of the cancer genome atlas data discovers a hierarchical association structure across thirty three cancer types.	PLOS Digit Health	2022
35729235	Cooperative stability renders protein complex formation more robust and controllable.	Sci Rep	2022
35665803	Characterization of gene cluster heterogeneity in single-cell transcriptomic data within and across cancer types.	Biol Open	2022
33469951	The C-degron pathway eliminates mislocalized proteins and products of deubiquitinating enzymes.	EMBO J	2021
34493766	Genotypes of informative loci from 1000 Genomes data allude evolution and mixing of human populations.	Sci Rep	2021
32142644	Population Histories of the United States Revealed through Fine-Scale Migration and Haplotype Analysis.	Am J Hum Genet	2020
31077681	Modelling bistable tumour population dynamics to design effective treatment strategies.	J Theor Biol	2019
31437254	Correction: Exploring candidate biological functions by Boolean Function Networks for Saccharomyces cerevisiae.	PLoS One	2019
30885118	MGSEA - a multivariate Gene set enrichment analysis.	BMC Bioinformatics	2019
30061703	Explaining cancer type specific mutations with transcriptomic and epigenomic features in normal tissues.	Sci Rep	2018
28837809	Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States.	Cell Syst	2017
28178267	A quantitative model for the rate-limiting process of UGA alternative assignments to stop and selenocysteine codons.	PLoS Comput Biol	2017
28981547	Exploring candidate biological functions by Boolean Function Networks for Saccharomyces cerevisiae.	PLoS One	2017
26786896	Analysis of spatial-temporal gene expression patterns reveals dynamics and regionalization in developing mouse brain.	Sci Rep	2016
27770811	Long range personalized cancer treatment strategies incorporating evolutionary dynamics.	Biol Direct	2016
27194416	Detection of 22q11.2 microduplication by cell-free DNA screening and chromosomal microarray in fetus with multiple anomalies.	Ultrasound Obstet Gynecol	2016
26160836	Putative effectors for prognosis in lung adenocarcinoma are ethnic and gender specific.	Oncotarget	2015
24700679	Genome-wide normalized score: a novel algorithm to detect fetal trisomy 21 during non-invasive prenatal testing.	Ultrasound Obstet Gynecol	2014
29764056	Nonstandard personalized medicine strategies for cancer may lead to improved patient outcomes.	Per Med	2014
24527393	Suppression of the SOX2 neural effector gene by PRDM1 promotes human germ cell fate in embryonic stem cells.	Stem Cell Reports	2014
23303791	Functional characterization of motif sequences under purifying selection.	Nucleic Acids Res	2013
23907387	An integrative characterization of recurrent molecular aberrations in glioblastoma genomes.	Nucleic Acids Res	2013
22529953	Genome-wide gene expression analysis implicates the immune response and lymphangiogenesis in the pathogenesis of fetal chylothorax.	PLoS One	2012
22936075	Evolution of domain architectures and catalytic functions of enzymes in metabolic systems.	Genome Biol Evol	2012
22891318	Impact of genetic dynamics and single-cell heterogeneity on development of nonstandard personalized medicine strategies for cancer.	Proc Natl Acad Sci U S A	2012
20737299	Integration of metabolic reactions and gene regulation.	Mol Biotechnol	2011
22051105	Deciphering causal and statistical relations of molecular aberrations and gene expressions in NCI-60 cell lines.	BMC Syst Biol	2011
20925909	An integrated analysis of molecular aberrations in NCI-60 cell lines.	BMC Bioinformatics	2010
19209724	Inferring disease-related pathways using a probabilistic epistasis model.	Pac Symp Biocomput	2009
19588110	Integration of metabolic reactions and gene regulation.	Methods Mol Biol	2009
19180177	A factor graph nested effects model to identify networks from genetic perturbations.	PLoS Comput Biol	2009
18434431	Combinatorial patterns of somatic gene mutations in cancer.	FASEB J	2008
19204811	Identifying coevolving partners from paralogous gene families.	Evol Bioinform Online	2008
17636042	Detecting the coevolution of biosequences--an example of RNA interaction prediction.	Mol Biol Evol	2007
17983264	Detecting coevolution in and among protein domains.	PLoS Comput Biol	2007
16597252	Modeling the combinatorial functions of multiple transcription factors.	J Comput Biol	2006
16820044	A joint model of regulatory and metabolic networks.	BMC Bioinformatics	2006
15998451	Validation and refinement of gene-regulatory pathways on a network of physical interactions.	Genome Biol	2005
15285891	Physical network models.	J Comput Biol	2004
11473023	Molecular classification of multiple tumor types.	Bioinformatics	2001
11742071	Multiclass cancer diagnosis using tumor gene expression signatures.	Proc Natl Acad Sci U S A	2001

1 - 41 of 41

Marco Mina

University of Lausanne, Switzerland Swiss Cancer Center Leman

Career Start Year 2012

Number of shared co-authors 2

James A Eddy

Benaroya Research Institute at Virginia Mason, Institute for Systems Biology, Sage Bionetworks, University of Illinois at Urbana-Champaign

Career Start Year 2008

Number of shared co-authors 1

Theo A Knijnenburg

Allen Institute for Cell Science

Career Start Year 2006

Number of shared co-authors 3

James C Costello

University of Colorado Anschutz Medical Campus

Career Start Year 2006

Number of shared co-authors 3

Matti Nykter

Prostate Cancer Research Center, Tampere University and Tays Cancer Center

Career Start Year 2006

Number of shared co-authors 0

Xiaotu Ma

St. Jude Children's Research Hospital

Career Start Year 2006

Number of shared co-authors 0

Christopher L Plaisier

Arizona State University

Career Start Year 2005

Number of shared co-authors 0

Dongxiao Zhu

Wayne State University

Career Start Year 2005

Number of shared co-authors 0

Han Liang

MD Anderson Cancer Center

Career Start Year 2005

Number of shared co-authors 5

Xianghong Jasmine Zhou

David Geffen School of Medicine, University of California at Los Angeles

Career Start Year 2004

Number of shared co-authors 0

Adam A Margolin

Icahn School of Medicine

Career Start Year 2004

Number of shared co-authors 14

Florian Markowetz

CRUK Cambridge Institute, University of Cambridge

Career Start Year 2003

Number of shared co-authors 0

Quaid Morris

Sloan Kettering Institute

Career Start Year 2003

Number of shared co-authors 1

Zhaolei Zhang

University of Toronto

Career Start Year 2002

Number of shared co-authors 0

Yidong Chen

The University of Texas Health Science Center at San Antonio

Career Start Year 2001

Number of shared co-authors 1

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 2

Ilya Shmulevich

Institute for Systems Biology

Career Start Year 2001

Number of shared co-authors 5

Wei Wang

IBM Thomas J Watson Research Center, University of California Los Angeles, University of North Carolina at Chapel Hill

Career Start Year 1999

Number of shared co-authors 0

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 2

Zhongming Zhao

Center for Precision Health, The University of Texas Health Science Center at Houston

Career Start Year 1998

Number of shared co-authors 0

Panayiotis V Benos

University of Florida

Career Start Year 1996

Number of shared co-authors 3

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 1

Dimitris Anastassiou

Columbia University

Career Start Year 1995

Number of shared co-authors 0

Andrea Califano

Columbia University

Career Start Year 1993

Number of shared co-authors 11

Andreas Beyer

University of Cologne

Career Start Year 1991

Number of shared co-authors 2

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 5

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 3

Michael F Ochs

The College of New Jersey

Career Start Year 1988

Number of shared co-authors 0

Seiya Imoto

Human Genome Center, The Institute of Medical Science, The University of Tokyo

Career Start Year 1978

Number of shared co-authors 0

Satoru Miyano

Tokyo Medical and Dental University

Career Start Year 1970

Number of shared co-authors 0

row(s) 1 - 30 of 30

Nardnisa Sintupisut

Ontario Institute for Cancer Research, University Ave Suite 510

Co-authored papers 5

Pablo Tamayo

University of California San Diego

Co-authored papers 4

Jill P Mesirov

University of California San Diego

Co-authored papers 3

Tommi S Jaakkola

Massachusetts Institute of Technology

Co-authored papers 3

David Haussler

Genomics Institute, University of California Santa Cruz

Co-authored papers 2

Trey Ideker (CM4AI)

University of California San Diego

Co-authored papers 2

Eric S Lander

Vanderbilt-Ingram Cancer Center, Vanderbilt University

Co-authored papers 2

Michael Reich

university of california san diego

Co-authored papers 2

Joshua M Stuart

University of California at Santa Cruz

Co-authored papers 2

Todd R Golub

Broad Institute of MIT and Harvard

Co-authored papers 2

Paul A Clemons

Broad Institute

Co-authored papers 1

Arnold J Levine

Simons Center for Systems Biology, Institute for Advanced Study

Co-authored papers 1

Levi A Garraway

Broad Institute of Harvard and MIT

Co-authored papers 1

William C Hahn

Broad Institute of MIT and Harvard, USA Dana-Farber Cancer Institute

Co-authored papers 1

Christine Ladd-Acosta

Co-authored papers 1

Aravind Subramanian

Co-authored papers 1

Jesse S Boehm

Broad Institute of Harvard and MIT

Co-authored papers 1

Arthur Liberzon

Broad Institute of MIT and Harvard

Co-authored papers 1

Mark J Daly

Massachusetts General Hospital

Co-authored papers 1

Fitnat H Yildiz

Co-authored papers 1

Kate Medetgul-Ernar

University of California San Diego Health Moores Cancer Center.

Co-authored papers 1

John G Doench

Co-authored papers 1

David J Konieczkowski

Co-authored papers 1

Barbara A Weir

Janssen Research and Development LLC

Co-authored papers 1

Frank McCormick

Frederick National Laboratory for Cancer Research

Co-authored papers 1

Mahmoud Ghandi

Co-authored papers 1

Eliezer M Van Allen

Dana-Farber Cancer Institute

Co-authored papers 1

Massimo Loda

Weill Medical College of Cornell University

Co-authored papers 1

Gabriela Alexe

Dana-Farber Cancer Institute

Co-authored papers 1

Omar O Abudayyeh

McGovern Institute for Brain Research at MIT Massachusetts Institute of Technology

Co-authored papers 1

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