Author details

Full Name

Roger Perkins

Affiliation

ORCID

Career Start Year

1997

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
28849567	ArrayTrack: An FDA and Public Genomic Tool.	Methods Mol Biol	2017
27489012	Erratum to: A novel procedure on next generation sequencing data analysis using text mining algorithm.	BMC Bioinformatics	2016
27023590	Pathway Analysis Revealed Potential Diverse Health Impacts of Flavonoids that Bind Estrogen Receptors.	Int J Environ Res Public Health	2016
27177941	A novel procedure on next generation sequencing data analysis using text mining algorithm.	BMC Bioinformatics	2016
26993983	Text mining for identifying topics in the literatures about adolescent substance use and depression.	BMC Public Health	2016
26690529	Comparing genetic variants detected in the 1000 genomes project with SNPs determined by the International HapMap Consortium.	J Genet	2015
25349334	Human sex hormone-binding globulin binding affinities of 125 structurally diverse chemicals and comparison with their binding to androgen receptor, estrogen receptor, and Î±-fetoprotein.	Toxicol Sci	2015
25384574	Quality control metrics improve repeatability and reproducibility of single-nucleotide variants derived from whole-genome sequencing.	Pharmacogenomics J	2015
26308263	Estrogenic activity data extraction and in silico prediction show the endocrine disruption potential of bisphenol A replacement compounds.	Chem Res Toxicol	2015
26424364	A heuristic approach to determine an appropriate number of topics in topic modeling.	BMC Bioinformatics	2015
25083553	Discovering functional modules by topic modeling RNA-Seq based toxicogenomic data.	Chem Res Toxicol	2014
25633159	An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era.	Genome Biol	2014
25350283	Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population.	BMC Bioinformatics	2014
25349983	Competitive molecular docking approach for predicting estrogen receptor subtype Î± agonists and antagonists.	BMC Bioinformatics	2014
25162709	Versatility or promiscuity: the estrogen receptors, control of ligand selectivity and an update on subtype selective ligands.	Int J Environ Res Public Health	2014
23393026	Critical role of bioinformatics in translating huge amounts of next-generation sequencing data into personalized medicine.	Sci China Life Sci	2013
24266910	Homology modeling, molecular docking, and molecular dynamics simulations elucidated Î±-fetoprotein binding modes.	BMC Bioinformatics	2013
23897986	EADB: an estrogenic activity database for assessing potential endocrine activity.	Toxicol Sci	2013
23013281	Rat Î±-Fetoprotein binding affinities of a large set of structurally diverse chemicals elucidated the relationships between structures and binding affinities.	Chem Res Toxicol	2012
22970228	Technical reproducibility of genotyping SNP arrays used in genome-wide association studies.	PLoS One	2012
22166133	Selecting a single model or combining multiple models for microarray-based classifier development?--a comparative analysis based on large and diverse datasets generated from the MAQC-II project.	BMC Bioinformatics	2011
21463242	Next-generation sequencing and its applications in molecular diagnostics.	Expert Rev Mol Diagn	2011
21834575	Comparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic acid on rat kidneys.	Chem Res Toxicol	2011
20368714	Assessing sources of inconsistencies in genotypes and their effects on genome-wide association studies with HapMap samples.	Pharmacogenomics J	2010
20946616	The EDKB: an established knowledge base for endocrine disrupting chemicals.	BMC Bioinformatics	2010
20676074	The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.	Nat Biotechnol	2010
20068095	DNA microarrays are predictive of cancer prognosis: a re-evaluation.	Clin Cancer Res	2010
20505247	Evaluating variations of genotype calling: a potential source of spurious associations in genome-wide association studies.	J Genet	2010
20047490	The accurate prediction of protein family from amino acid sequence by measuring features of sequence fragments.	J Comput Biol	2009
19278560	Investigation of reproducibility of differentially expressed genes in DNA microarrays through statistical simulation.	BMC Proc	2009
19059192	Correlation analysis of external RNA controls reveals its utility for assessment of microarray assay.	Anal Biochem	2009
19597796	ArrayTrack: an FDA and public genomic tool.	Methods Mol Biol	2009
18793455	The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies.	BMC Bioinformatics	2008
18155896	Reproducible and reliable microarray results through quality control: good laboratory proficiency and appropriate data analysis practices are essential.	Curr Opin Biotechnol	2008
18564836	Mold(2), molecular descriptors from 2D structures for chemoinformatics and toxicoinformatics.	J Chem Inf Model	2008
18793473	Very Important Pool (VIP) genes--an application for microarray-based molecular signatures.	BMC Bioinformatics	2008
18793462	Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.	BMC Bioinformatics	2008
17303535	Consensus analysis of multiple classifiers using non-repetitive variables: diagnostic application to microarray gene expression data.	Comput Biol Chem	2007
24980713	An integrated bioinformatics infrastructure essential for advancing pharmacogenomics and personalized medicine in the context of the FDA's Critical Path Initiative.	Drug Discov Today Technol	2007
17411393	Self-self hybridization as an alternative experiment design to dye swap for two-color microarrays.	OMICS	2007
17118145	GOFFA: gene ontology for functional analysis--a FDA gene ontology tool for analysis of genomic and proteomic data.	BMC Bioinformatics	2006
20020998	Gaining Confidence on Molecular Classification through Consensus Modeling and Validation.	Toxicol Mech Methods	2006
16964229	The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements.	Nat Biotechnol	2006
16610953	Gene expression profile exploration of a large dataset on chronic fatigue syndrome.	Pharmacogenomics	2006
16234175	An in silico ensemble method for lead discovery: decision forest.	SAR QSAR Environ Res	2005
16026603	Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling.	BMC Bioinformatics	2005
16026602	Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS).	BMC Bioinformatics	2005
16026601	Decision forest analysis of 61 single nucleotide polymorphisms in a case-control study of esophageal cancer; a novel method.	BMC Bioinformatics	2005
16026597	Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential.	BMC Bioinformatics	2005
16026596	Microarray scanner calibration curves: characteristics and implications.	BMC Bioinformatics	2005