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Author Details

Oliver F Lange
Center for Integrated Protein Science, Technische Universitat Munchen
2004
72
35
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37024568Experimental strategies to improve drug-target identification in mass spectrometry-based thermal stability assays.Commun Chem2023
30220210Limits for Resolving Isobaric Tandem Mass Tag Reporter Ions Using Phase-Constrained Spectrum Deconvolution.J Proteome Res2018
27936510Systematic evaluation of CS-Rosetta for membrane protein structure prediction with sparse NOE restraints.Proteins2017
29040648Molecular basis for asymmetry sensing of siRNAs by the Drosophila Loqs-PD/Dcr-2 complex in RNA interference.Nucleic Acids Res2017
26953259Regulatory Implications of Non-Trivial Splicing: Isoform 3 of Rab1A Shows Enhanced Basal Activity and Is Not Controlled by Accessory Proteins.J Mol Biol2016
25388768A hybrid NMR/SAXS-based approach for discriminating oligomeric protein interfaces using Rosetta.Proteins2015
26381271A Framework to Simplify Combined Sampling Strategies in Rosetta.PLoS One2015
26713437Combining Evolutionary Information and an Iterative Sampling Strategy for Accurate Protein Structure Prediction.PLoS Comput Biol2015
26053419Application of Enhanced Sampling Monte Carlo Methods for High-Resolution Protein-Protein Docking in Rosetta.PLoS One2015
26036565NMR Exchange Format: a unified and open standard for representation of NMR restraint data.Nat Struct Mol Biol2015
25706231Side-binding proteins modulate actin filament dynamics.Elife2015
25564702Access to Cα backbone dynamics of biological solids by 13C T1 relaxation and molecular dynamics simulation.J Am Chem Soc2015
24878962A mechanism for the auto-inhibition of hyperpolarization-activated cyclic nucleotide-gated (HCN) channel opening and its relief by cAMP.J Biol Chem2014
25208235Development of a GC/Quadrupole-Orbitrap mass spectrometer, part I: design and characterization.Anal Chem2014
25360005The Q Exactive HF, a Benchtop mass spectrometer with a pre-filter, high-performance quadrupole and an ultra-high-field Orbitrap analyzer.Mol Cell Proteomics2014
24979800Differential global structural changes in the core particle of yeast and mouse proteasome induced by ligand binding.Proc Natl Acad Sci U S A2014
24989039Site-specific analysis of heteronuclear Overhauser effects in microcrystalline proteins.J Biomol NMR2014
24831340Automatic NOESY assignment in CS-RASREC-Rosetta.J Biomol NMR2014
24796936Improvement of virtual screening results by docking data feature analysis.J Chem Inf Model2014
24845473Robust and highly accurate automatic NOESY assignment and structure determination with Rosetta.J Biomol NMR2014
23975356Improved chemical shift based fragment selection for CS-Rosetta using Rosetta3 fragment picker.J Biomol NMR2013
24251866Novel parallelized quadrupole/linear ion trap/Orbitrap tribrid mass spectrometer improving proteome coverage and peptide identification rates.Anal Chem2013
23912841Improving 3D structure prediction from chemical shift data.J Biomol NMR2013
24009670Replica exchange improves sampling in low-resolution docking stage of RosettaDock.PLoS One2013
22159718Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes.Mol Cell Proteomics2012
22958200Evaluation and optimization of discrete state models of protein folding.J Phys Chem B2012
22955930In support of the BMRB.Nat Struct Mol Biol2012
22733734Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.Proc Natl Acad Sci U S A2012
22423358Resolution-adapted recombination of structural features significantly improves sampling in restraint-guided structure calculation.Proteins2012
22325772Blind testing of routine, fully automated determination of protein structures from NMR data.Structure2012
21187238ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules.Methods Enzymol2011
22113802Kinetics of conformational sampling in ubiquitin.Angew Chem Int Ed Engl2011
21857680Solution structure of a minor and transiently formed state of a T4 lysozyme mutant.Nature2011
21624375Structure of the BamC two-domain protein obtained by Rosetta with a limited NMR data set.J Mol Biol2011
21642640Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.Mol Cell Proteomics2011
21466200Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings.J Am Chem Soc2011
20054832Prediction of structures of zinc-binding proteins through explicit modeling of metal coordination geometry.Protein Sci2010
20643085Scrutinizing molecular mechanics force fields on the submicrosecond timescale with NMR data.Biophys J2010
20133520NMR structure determination for larger proteins using backbone-only data.Science2010
20186277Estimating absolute configurational entropies of macromolecules: the minimally coupled subspace approach.PLoS One2010
19216090Performance evaluation of a high-field Orbitrap mass analyzer.J Am Soc Mass Spectrom2009
20689662On the application of (topographic) independent and tree-dependent component analysis for the examination of DCE-MRI data.Biomed Signal Process Control2009
20379361Small lesions evaluation based on unsupervised cluster analysis of signal-intensity time courses in dynamic breast MRI.Int J Biomed Imaging2009
19701941Structure prediction for CASP8 with all-atom refinement using Rosetta.Proteins2009
19658735Adaptive anisotropic kernels for nonparametric estimation of absolute configurational entropies in high-dimensional configuration spaces.Phys Rev E Stat Nonlin Soft Matter Phys2009
19828875A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.Mol Cell Proteomics2009
17876828Full correlation analysis of conformational protein dynamics.Proteins2008
19915691COMPUTER-AIDED DIAGNOSIS AND VISUALIZATION BASED ON CLUSTERING AND INDEPENDENT COMPONENT ANALYSIS FOR BREAST MRI.Proc Int Conf Image Proc2008
19255616Model-Free Visualization of Suspicious Lesions in Breast MRI Based on Supervised and Unsupervised Learning.Eng Appl Artif Intell2008
19021570Residual dipolar couplings as a tool to study molecular recognition of ubiquitin.Biochem Soc Trans2008
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Collaborators

David Baker
University of Washington
Co-authored papers 15
Gaetano T Montelione
Rensselaer Polytechnic Institute
Co-authored papers 7
Matthias Mann
Max-Planck Institute of Biochemistry
Co-authored papers 6
Jens Meiler
Vanderbilt University
Co-authored papers 4
Bernd Reif
Technische Universitat Munchen (TUM)
Co-authored papers 3
Geerten W Vuister
Leicester Institute of Structural and Chemical Biology, University of Leicester
Co-authored papers 3
Alexandre M J J Bonvin
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 3
Yang Shen
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Co-authored papers 3
Ad Bax
National Institutes of Health
Co-authored papers 3
Michael A Kennedy
Miami University
Co-authored papers 2
Tanja Kortemme
University of California san francisco
Co-authored papers 2
Michael Nilges
Institut Pasteur
Co-authored papers 2
Cheryl H Arrowsmith
University of Toronto
Co-authored papers 2
Michael Sattler
Technical University of Munich, Institute of Structural Biology
Co-authored papers 2
J??rgen Cox
Max-Planck Institute of Biochemistry
Co-authored papers 2
Elizabeth H Kellogg
Cornell University
Co-authored papers 2
John L Markley
University of Wisconsin-Madison
Co-authored papers 2
Frank DiMaio
University of Washington
Co-authored papers 2
Michele Vendruscolo
University of Cambridge
Co-authored papers 2
Rhiju Das
Stanford University School of Medicine
Co-authored papers 2
Martin Zacharias
Co-authored papers 2
Thomas B Acton
Center for Advanced Biotechnology and Medicine, The State University of New Jersey
Co-authored papers 2
David A Case
Rutgers University
Co-authored papers 2
Rong Xiao
School of Public Health, Capital Medical University
Co-authored papers 2
Lewis E Kay
University of Toronto
Co-authored papers 2
Aleksandras Gutmanas
European Bioinformatics Institute
Co-authored papers 2
Boris Ma??ek
Interfaculty Institute for Cell Biology, University of Tubingen
Co-authored papers 2
Gunnar F Schr??der
Institute of Biological Information Processing (Structural Biochemistry)
Co-authored papers 1
David Middleton
Co-authored papers 1
Ioannis Vakonakis
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