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Author Details

Aindrila Mukhopadhyay
Joint BioEnergy Institute
2000
123
40
PMIDPaper TitleJournal TitlePublished Year
37930866IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.Nucleic Acids Res2024
36691869Development of genetic tools for heterologous protein expression in a pentose-utilizing environmental isolate of Pseudomonas putida.Microb Biotechnol2023
37665664Maximizing microbial bioproduction from sustainable carbon sources using iterative systems engineering.Cell Rep2023
37991384REC protein family expansion by the emergence of a new signaling pathway.mBio2023
37924688Improving microbial bioproduction under low-oxygen conditions.Curr Opin Biotechnol2023
37138074Complete integration of carbene-transfer chemistry into biosynthesis.Nature2023
36549106Biosystem design of Corynebacterium glutamicum for bioproduction.Curr Opin Biotechnol2023
35285712Nitrogen Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing.Appl Environ Microbiol2022
35725867Pseudomonas response regulators produced in an E. coli heterologous expression host exhibit host-derived post-translational phosphorylation.Sci Rep2022
35359611Scalable and automated CRISPR-based strain engineering using droplet microfluidics.Microsyst Nanoeng2022
36550285Photobiological production of high-value pigments via compartmentalized co-cultures using Ca-alginate hydrogels.Sci Rep2022
36397160Precursor prioritization for p-cymene production through synergistic integration of biology and chemistry.Biotechnol Biofuels Bioprod2022
36510293Engineering isoprenoids production in metabolically versatile microbial host Pseudomonas putida.Biotechnol Biofuels Bioprod2022
36482295Advanced one-pot deconstruction and valorization of lignocellulosic biomass into triacetic acid lactone using Rhodosporidium toruloides.Microb Cell Fact2022
36158112Tuning a high performing multiplexed-CRISPRi <i>Pseudomonas putida</i> strain to further enhance indigoidine production.Metab Eng Commun2022
34985270Assembly and Evolution of Artificial Metalloenzymes within <i>E. coli</i> Nissle 1917 for Enantioselective and Site-Selective Functionalization of C⿿H and C⿐C Bonds.J Am Chem Soc2022
33482331Efficient production of oxidized terpenoids via engineering fusion proteins of terpene synthase and cytochrome P450.Metab Eng2021
33581331Engineering Saccharomyces cerevisiae for isoprenol production.Metab Eng2021
34869279Genomics Characterization of an Engineered <i>Corynebacterium glutamicum</i> in Bioreactor Cultivation Under Ionic Liquid Stress.Front Bioeng Biotechnol2021
34650235Unnatural biosynthesis by an engineered microorganism with heterologously expressed natural enzymes and an artificial metalloenzyme.Nat Chem2021
34184913Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance.mSystems2021
33964456Engineering Pseudomonas putida for efficient aromatic conversion to bioproduct using high throughput screening in a bioreactor.Metab Eng2021
34009716Development of dual-inducible duet-expression vectors for tunable gene expression control and CRISPR interference-based gene repression in Pseudomonas putida KT2440.Microb Biotechnol2021
34172951Microbial production of advanced biofuels.Nat Rev Microbiol2021
33221420Machine learning for metabolic engineering: A review.Metab Eng2021
32412752Chemoinformatic-Guided Engineering of Polyketide Synthases.J Am Chem Soc2020
31841635Identification, Characterization, and Application of a Highly Sensitive Lactam Biosensor from <i>Pseudomonas putida</i>.ACS Synth Biol2020
31992180Fluorescent amplification for next generation sequencing (FA-NGS) library preparation.BMC Genomics2020
31927061Systems and synthetic biology tools for advanced bioproduction hosts.Curr Opin Biotechnol2020
33183275Conversion of poplar biomass into high-energy density tricyclic sesquiterpene jet fuel blendstocks.Microb Cell Fact2020
33097726Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale.Nat Commun2020
32826213Fatty Acid and Alcohol Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing.Appl Environ Microbiol2020
32963959Adaptive laboratory evolution of <i>Pseudomonas putida</i> KT2440 improves <i>p</i>-coumaric and ferulic acid catabolism and tolerance.Metab Eng Commun2020
32793173Iron Supplementation Eliminates Antagonistic Interactions Between Root-Associated Bacteria.Front Microbiol2020
32811554Investigation of Bar-seq as a method to study population dynamics of Saccharomyces cerevisiae deletion library during bioreactor cultivation.Microb Cell Fact2020
32504628Construction of a novel dual-inducible duet-expression system for gene (over)expression in Pseudomonas putida.Plasmid2020
32212247Tools to map target genes of bacterial two-component system response regulators.Environ Microbiol Rep2020
30536693A new family of transcriptional regulators of tungstoenzymes and molybdate/tungstate transport.Environ Microbiol2019
31890587Production of tetra-methylpyrazine using engineered <i>Corynebacterium glutamicum</i>.Metab Eng Commun2019
31884968Correction to: Production efficiency of the bacterial non-ribosomal peptide indigoidine relies on the respiratory metabolic state in S. cerevisiae.Microb Cell Fact2019
31848306Native Plasmid-Encoded Mercury Resistance Genes Are Functional and Demonstrate Natural Transformation in Environmental Bacterial Isolates.mSystems2019
31388393Isolation and Characterization of Bacterial Cellulase Producers for Biomass Deconstruction: A Microbiology Laboratory Course.J Microbiol Biol Educ2019
31499175Optimization of the IPP-bypass mevalonate pathway and fed-batch fermentation for the production of isoprenol in Escherichia coli.Metab Eng2019
31515332Complete Genome Sequence of <i>Agrobacterium</i> sp. Strain 33MFTa1.1, Isolated from <i>Thlaspi arvense</i> Roots.Microbiol Resour Announc2019
31255171A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides.Microb Cell Fact2019
30808697Large Circular Plasmids from Groundwater Plasmidomes Span Multiple Incompatibility Groups and Are Enriched in Multimetal Resistance Genes.mBio2019
30982958Methyl ketone production by Pseudomonas putida is enhanced by plant-derived amino acids.Biotechnol Bioeng2019
30858878Engineering <i>Corynebacterium glutamicum</i> to produce the biogasoline isopentenol from plant biomass hydrolysates.Biotechnol Biofuels2019
30964892LurR is a regulator of the central lactate oxidation pathway in sulfate-reducing Desulfovibrio species.PLoS One2019
30819548Engineering Robust Production Microbes for Large-Scale Cultivation.Trends Microbiol2019
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Collaborators

Jay D Keasling
University of California berkeley
Co-authored papers 64
Edward E K Baidoo
Joint BioEnergy Institute
Co-authored papers 24
Christopher J Petzold
Joint BioEnergy Institute
Co-authored papers 23
Lara Rajeev
Lawrence Berkeley National Laboratory
Co-authored papers 17
Alyssa M Redding
Lawrence Berkeley National Laboratory, Joint BioEnergy Institute
Co-authored papers 15
Blake A Simmons
Joint BioEnergy Institute, USA Lawrence Berkeley National Laboratory
Co-authored papers 15
Adam P Arkin
Lawrence Berkeley National Laboratory
Co-authored papers 14
Judy D Wall
University of Missouri
Co-authored papers 13
Hector Garcia Martin
Lawrence Berkeley National Laboratory
Co-authored papers 13
Paul D Adams
Lawrence Berkeley National Laboratory
Co-authored papers 12
Terry C Hazen
University of Tennessee
Co-authored papers 11
Steven W Singer
Co-authored papers 11
Tanveer S Batth
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Co-authored papers 9
Deepanwita Banerjee
Joint BioEnergy Institute, Lawrence Berkeley National Laboratory
Co-authored papers 8
Jizhong Zhou
Institute for Environmental Genomics, University of Oklahoma
Co-authored papers 8
Peter I Benke
Life Sciences Institute, National University of Singapore
Co-authored papers 7
Zhili He
Environmental Microbiomics Research Center, Sun Yat-Sen University
Co-authored papers 7
Deepti Tanjore
Lawrence Berkeley National Laboratory
Co-authored papers 7
Marcin P Joachimiak
E O Lawrence Berkeley National Laboratory, UCSF Medical Center, University of California, Berkeley, University of Chicago
Co-authored papers 7
Nathan J Hillson
Lawrence Berkeley National Laboratory
Co-authored papers 7
Matthew W Fields
Center for Biofilm Engineering (CBE), Montana State University
Co-authored papers 6
Pavel S Novichkov
Lawrence Berkeley National Laboratory
Co-authored papers 6
Adam M Deutschbauer
Lawrence Berkeley National Laboratory
Co-authored papers 6
Grant M Zane
University of Missouri
Co-authored papers 6
Dominique C Joyner
University of Tennessee
Co-authored papers 5
Qiang He
University of Tennessee
Co-authored papers 5
David A Stahl
University of Washington
Co-authored papers 5
Aifen Zhou
University of Oklahoma
Co-authored papers 4
Patrick M Shih
Co-authored papers 4
Sharon Borglin
Lawrence Berkeley National Laboratory
Co-authored papers 3
Release 1.2