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Author Details

Andrew Adey
Knight Cancer Institute, Oregon Health and Science University
2010
48
29
PMIDPaper TitleJournal TitlePublished Year
36792372Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing.Genome Res2023
37918402Accessible high-throughput single-cell whole-genome sequencing with paired chromatin accessibility.Cell Rep Methods2023
38014233Identification of Cellular Interactions in the Tumor Immune Microenvironment Underlying CD8 T Cell Exhaustion.bioRxiv2023
37506692Population screening shows risk of inherited cancer and familial hypercholesterolemia in Oregon.Am J Hum Genet2023
37502923sciMET-cap: High-throughput single-cell methylation analysis with a reduced sequencing burden.bioRxiv2023
36993424Supervised learning of high-confidence phenotypic subpopulations from single-cell data.bioRxiv2023
36681742BET inhibitors rescue anti-PD1 resistance by enhancing TCF7 accessibility in leukemia-derived terminally exhausted CD8<sup>+</sup> T cells.Leukemia2023
34764492Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data.Nat Biotechnol2022
35833801Cas12a-Capture: A Novel, Low-Cost, and Scalable Method for Targeted Sequencing.CRISPR J2022
36494343High-throughput robust single-cell DNA methylation profiling with sciMETv2.Nat Commun2022
35944998Shared and Distinct Functional Effects of Patient-Specific <i>Tbr1</i> Mutations on Cortical Development.J Neurosci2022
34226710High-content single-cell combinatorial indexing.Nat Biotechnol2021
33627658Spatially mapped single-cell chromatin accessibility.Nat Commun2021
34911933Epigenetic loss of heterogeneity from low to high grade localized prostate tumours.Nat Commun2021
34599003Tagmentation-based single-cell genomics.Genome Res2021
34446720Neutralization of SARS-CoV-2 variants by convalescent and BNT162b2 vaccinated serum.Nat Commun2021
34097533Age-dependent transcriptional alterations in cardiac endothelial cells.Physiol Genomics2021
33958789Single-cell multiomics to probe relationships between histone modifications and transcription.Nat Methods2021
30683754Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion.Genome Res2019
31702783The Rhododendron Genome and Chromosomal Organization Provide Insight into Shared Whole-Genome Duplications across the Heath Family (Ericaceae).Genome Biol Evol2019
31495564High-Throughput Single-Cell Sequencing with Linear Amplification.Mol Cell2019
31199914Integration of Single-Cell Genomics Datasets.Cell2019
30936163The accessible chromatin landscape of the murine hippocampus at single-cell resolution.Genome Res2019
29224141Tagmentation-Based Library Preparation for Low DNA Input Whole Genome Bisulfite Sequencing.Methods Mol Biol2018
30166440Joint profiling of chromatin accessibility and gene expression in thousands of single cells.Science2018
30078726Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data.Mol Cell2018
30232459Differentiation-state plasticity is a targetable resistance mechanism in basal-like breast cancer.Nat Commun2018
30366908Post-translational modification localizes MYC to the nuclear pore basket to regulate a subset of target genes involved in cellular responses to environmental signals.Genes Dev2018
29644997Highly scalable generation of DNA methylation profiles in single cells.Nat Biotechnol2018
28818938Comprehensive single-cell transcriptional profiling of a multicellular organism.Science2017
28135258Sequencing thousands of single-cell genomes with combinatorial indexing.Nat Methods2017
29114045Haplotype resolution at the single-cell level.Proc Natl Acad Sci U S A2017
26650888Recurrent somatic loss of TNFRSF14 in classical Hodgkin lymphoma.Genes Chromosomes Cancer2016
25953818Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing.Science2015
25948246Haplotype-resolved genome sequencing: experimental methods and applications.Nat Rev Genet2015
24189654Validation and implementation of targeted capture and sequencing for the detection of actionable mutation, copy number variation, and gene rearrangement in clinical cancer specimens.J Mol Diagn2014
25608559Deep sequencing of multiple regions of glial tumors reveals spatial heterogeneity for mutations in clinically relevant genes.Genome Biol2014
25327137In vitro, long-range sequence information for de novo genome assembly via transposase contiguity.Genome Res2014
25326703Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing.Nat Genet2014
24964173Decoding long nanopore sequencing reads of natural DNA.Nat Biotechnol2014
24285304megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering.Nucleic Acids Res2014
23925245The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line.Nature2013
24071908Tagmentation-based whole-genome bisulfite sequencing.Nat Protoc2013
24185095Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions.Nat Biotechnol2013
22466172Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing.Genome Res2012
23112150Capturing native long-range contiguity by in situ library construction and optical sequencing.Proc Natl Acad Sci U S A2012
21170042Haplotype-resolved genome sequencing of a Gujarati Indian individual.Nat Biotechnol2011
21143862Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition.Genome Biol2010
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Collaborators

Jay Shendure
University of Washington
Co-authored papers 22
Joseph B Hiatt
Fred Hutchinson Cancer Center
Co-authored papers 4
Paul T Spellman
Oregon Health & Science University Hospital.
Co-authored papers 3
Rosalie C Sears
Oregon Health and Science University
Co-authored papers 3
Kevin L Gunderson
Illumina Inc.
Co-authored papers 3
David Wu
University of Washington
Co-authored papers 2
Christoph Plass
German Cancer Research Center
Co-authored papers 2
Gail Mandel
Vollum Institute, Oregon Health and Science University
Co-authored papers 2
Roland Eils
Berlin Institute of Health (BIH) and Charite
Co-authored papers 2
Alexey V Danilov
City of Hope National Medical Center
Co-authored papers 2
Stephan Wolf
Co-authored papers 2
Lucia Carbone
Knight Cardiovascular Institute, Oregon Health and Science University
Co-authored papers 2
Dieter Weichenhan
German Cancer Research Center (DKFZ)
Co-authored papers 2
Mostafa Ronaghi
Co-authored papers 2
Galip G??rkan Yard??mc??
University of Washington
Co-authored papers 2
John R Sinnamon
Vollum Institute, Oregon Health and Science University
Co-authored papers 2
Evan E Eichler
University of Washington
Co-authored papers 1
Gordon B Mills
Knight Cancer Institute, Oregon Health and Sciences University
Co-authored papers 1
Wojciech Wiszniewski
Oregon Health & Sciences University
Co-authored papers 1
David Baker
University of Washington
Co-authored papers 1
Mariano J Alvarez
Vagelos College of Physicians and Surgeons, Columbia University Irving Medical Center
Co-authored papers 1
Colin C Pritchard
University of Washington, USA Brotman Baty Institute for Precision Medicine
Co-authored papers 1
Melissa H Wong
Oregon Health & Science University
Co-authored papers 1
Mary-Claire King
University of Washington
Co-authored papers 1
William Stafford Noble
Co-authored papers 1
Andrea Califano
Columbia University
Co-authored papers 1
Shannon K McWeeney
Oregon Health & Science University, University of California Berkeley
Co-authored papers 1
George V Thomas
Knight Cancer Institute, Oregon Health and Science University
Co-authored papers 1
Amy Moran
Oregon Health & Science University
Co-authored papers 1
Suzanne S Fei
Oregon National Primate Research Center
Co-authored papers 1
Release 1.2