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Author Details

Paul I Costea
Weizmann Institute of Science
2012
27
23
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34791031metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes.Bioinformatics2022
36087889TRPV channel nanchung and TRPA channel water witch form insecticide-activated complexes.Insect Biochem Mol Biol2022
30658995Antibiotics-induced monodominance of a novel gut bacterial order.Gut2019
30833550Microbial abundance, activity and population genomic profiling with mOTUs2.Nat Commun2019
30747106Extensive transmission of microbes along the gastrointestinal tract.Elife2019
29255284Enterotypes in the landscape of gut microbial community composition.Nat Microbiol2018
30056386Metagenomic analysis of gut microbial communities from a Central Asian population.BMJ Open2018
29669589Similarity of the dog and human gut microbiomes in gene content and response to diet.Microbiome2018
29496731Selective maternal seeding and environment shape the human gut microbiome.Genome Res2018
29440750Publisher Correction: Enterotypes in the landscape of gut microbial community composition.Nat Microbiol2018
29489753Environment dominates over host genetics in shaping human gut microbiota.Nature2018
28753663metaSNV: A tool for metagenomic strain level analysis.PLoS One2017
28470190Corrigendum: Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.Nature2017
28967887Towards standards for human fecal sample processing in metagenomic studies.Nat Biotechnol2017
29176730The microbiomes of blowflies and houseflies as bacterial transmission reservoirs.Sci Rep2017
29143823Salt-responsive gut commensal modulates T<sub>H</sub>17 axis and disease.Nature2017
29242367Subspecies in the global human gut microbiome.Mol Syst Biol2017
27126044Durable coexistence of donor and recipient strains after fecal microbiota transplantation.Science2016
27365449Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.Science2016
25999513Ocean plankton. Structure and function of the global ocean microbiome.Science2015
26633628Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.Nature2015
25888008Temporal and technical variability of human gut metagenomes.Genome Biol2015
24681719A fair comparison.Nat Methods2014
25432777Potential of fecal microbiota for early-stage detection of colorectal cancer.Mol Syst Biol2014
23499923Interpretation, stratification and evidence for sequence variants affecting mRNA splicing in complete human genome sequences.Genomics Proteomics Bioinformatics2013
23469199TagGD: fast and accurate software for DNA Tag generation and demultiplexing.PLoS One2013
23158748Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines.Genome Med2012
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Collaborators

Peer Bork
University of Wurzburg
Co-authored papers 21
Georg Zeller
Max Planck Institute for Developmental Biology
Co-authored papers 11
Jeroen Raes
KU Leuven - University of Leuven
Co-authored papers 5
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Max Delbruck Center for Molecular Medicine (MDC)
Co-authored papers 5
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Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen
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KTH Royal Institute of Technology
Co-authored papers 3
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Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
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Center for Public Health Genomics, University of Virginia
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Jean Weissenbach
Institut Francois Jacob, CNRS, Universite Paris-Saclay
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Eric J Alm
Massachusetts Institute of Technology 21 Ames St. Cambridge
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Andrey Alexeyenko
Karolinska Institutet
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Paul Wilmes
University of Luxembourg
Co-authored papers 1
Takuji Yamada
Tokyo Institute of Technology
Co-authored papers 1
Michaela Asp
KTH Royal Institute of Technology
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Jan Mulder
Karolinska Institute
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Lilia Hedberg
KTH - Royal Institute of Technology
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Alex Mitchell
European Bioinformatics Institute
Co-authored papers 1
Smadar Shilo
Weizmann Institute of Science
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Sverker Lundin
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Release 1.2