Author details

Full Name

Chunlei Wu

Affiliation

The Scripps Research Institute

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35020801	BioThings SDK: a toolkit for building high-performance data APIs in biomedical research.	Bioinformatics	2022
35265836	Generation and network analysis of an RNA-seq transcriptional atlas for the rat.	NAR Genom Bioinform	2022
32805036	The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.	J Am Med Inform Assoc	2021
32180547	Wikidata as a knowledge graph for the life sciences.	Elife	2020
30951672	exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.	Cell	2019
31560691	Advancing computational biology and bioinformatics research through open innovation competitions.	PLoS One	2019
31211397	ChlamBase: a curated model organism database for the Chlamydia research community.	Database (Oxford)	2019
30985891	ChlamBase: a curated model organism database for the Chlamydia research community.	Database (Oxford)	2019
29743677	Diverse reprogramming codes for neuronal identity.	Nature	2018
30086717	Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken.	BMC Genomics	2018
29390967	Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration.	BMC Bioinformatics	2018
28915238	A high resolution atlas of gene expression in the domestic sheep (Ovis aries).	PLoS Genet	2017
28365742	WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.	Database (Oxford)	2017
28138153	CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.	Nat Genet	2017
27022157	Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes.	Database (Oxford)	2016
26555599	dbNSFP v3.0: A One-Stop Database of Functional Predictions and Annotations for Human Nonsynonymous and Splice-Site SNVs.	Hum Mutat	2016
26578587	BioGPS: building your own mash-up of gene annotations and expression profiles.	Nucleic Acids Res	2016
27154141	High-performance web services for querying gene and variant annotation.	Genome Biol	2016
25592589	Microtask crowdsourcing for disease mention annotation in PubMed abstracts.	Pac Symp Biocomput	2015
25654473	The cure: design and evaluation of a crowdsourcing game for gene selection for breast cancer survival prediction.	JMIR Serious Games	2014
23175613	BioGPS and MyGene.info: organizing online, gene-centric information.	Nucleic Acids Res	2013
23583182	Stress-independent activation of XBP1s and/or ATF6 reveals three functionally diverse ER proteostasis environments.	Cell Rep	2013
22847375	BioGPS and GXD: mouse gene expression data-the benefits and challenges of data integration.	Mamm Genome	2012
23153189	A gene expression atlas of the domestic pig.	BMC Biol	2012
22884261	Identification of serum-derived sphingosine-1-phosphate as a small molecule regulator of YAP.	Chem Biol	2012
20479508	TCLUST: a fast method for clustering genome-scale expression data.	IEEE/ACM Trans Comput Biol Bioinform	2011
22016777	CAFET algorithm reveals Wnt/PCP signature in lung squamous cell carcinoma.	PLoS One	2011
20133595	Screening the mammalian extracellular proteome for regulators of embryonic human stem cell pluripotency.	Proc Natl Acad Sci U S A	2010
20823227	A small molecule accelerates neuronal differentiation in the adult rat.	Proc Natl Acad Sci U S A	2010
19266052	A common and unstable copy number variant is associated with differences in Glo1 expression and anxiety-like behavior.	PLoS One	2009
19919682	BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources.	Genome Biol	2009
18613750	A gene wiki for community annotation of gene function.	PLoS Biol	2008
18949031	Genetical genomics: spotlight on QTL hotspots.	PLoS Genet	2008
18464898	Gene set enrichment in eQTL data identifies novel annotations and pathway regulators.	PLoS Genet	2008
17169993	Free energy of DNA duplex formation on short oligonucleotide microarrays.	Nucleic Acids Res	2007
17537749	Short oligonucleotide probes containing G-stacks display abnormal binding affinity on Affymetrix microarrays.	Bioinformatics	2007
17855562	Inhibition of histone deacetylase activity induces developmental plasticity in oligodendrocyte precursor cells.	Proc Natl Acad Sci U S A	2007
17409088	Genomewide association analysis in diverse inbred mice: power and population structure.	Genetics	2007
15713737	Applications of beta-mixture models in bioinformatics.	Bioinformatics	2005
15914663	Sequence dependence of cross-hybridization on short oligo microarrays.	Nucleic Acids Res	2005
15022276	Differential gene and protein expression in primary breast malignancies and their lymph node metastases as revealed by combined cDNA microarray and tissue microarray analysis.	Cancer	2004
15175679	Response to Preprocessing of oligonucleotide array data.	Nat Biotechnol	2004
12398198	Increased yield of total RNA from fine-needle aspirates for use in expression microarray analysis.	Biotechniques	2002

1 - 43 of 43

Ludwig Geistlinger

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 2008

Number of shared co-authors 1

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

Avi Ma'ayan

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 3

Wenjin Jim Zheng

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 3

Xianghong Jasmine Zhou

David Geffen School of Medicine, University of California at Los Angeles

Career Start Year 2004

Number of shared co-authors 0

Quaid Morris

Sloan Kettering Institute

Career Start Year 2003

Number of shared co-authors 1

Leandro C Hermida

University of Pittsburgh

Career Start Year 2003

Number of shared co-authors 1

Zhandong Liu

Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital

Career Start Year 2003

Number of shared co-authors 2

Ted Liefeld

Moores Cancer Center, University of California San Diego

Career Start Year 2003

Number of shared co-authors 1

Xijin Ge

South Dakota State University

Career Start Year 2002

Number of shared co-authors 1

Carsten O Daub

International Institute of Molecular and Cell Biology in Warsaw

Career Start Year 2002

Number of shared co-authors 7

Zhaohui S Qin

Emory University

Career Start Year 2002

Number of shared co-authors 2

Razvan Sultana

John A. Burns School of Medicine, University of Hawaii at Manoa

Career Start Year 2001

Number of shared co-authors 5

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 1

Johan Rung

Uppsala University

Career Start Year 2001

Number of shared co-authors 0

Michael Reich

university of california san diego

Career Start Year 2001

Number of shared co-authors 1

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 10

Hedi Peterson

Institute of Computer Science, University of Tartu

Career Start Year 2000

Number of shared co-authors 1

Ralf Herwig

Max Planck Institute for Molecular Genetics

Career Start Year 1998

Number of shared co-authors 0

Melissa S Cline

Genomics Institute, University of California Santa Cruz

Career Start Year 1997

Number of shared co-authors 9

Helen Parkinson

European Bioinformatics Institute

Career Start Year 1997

Number of shared co-authors 13

Alvis Brazma

European Bioinformatics Institute

Career Start Year 1996

Number of shared co-authors 6

Jaak Vilo

Institute of Computer Science, University of Tartu

Career Start Year 1996

Number of shared co-authors 2

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 3

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 1

Jill P Mesirov

University of California San Diego

Career Start Year 1992

Number of shared co-authors 6

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 4

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 15

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 4

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 9

row(s) 1 - 30 of 30

Andrew I Su

The Scripps Research Institute

Co-authored papers 28

Cyrus Afrasiabi

The Scripps Research Institute

Co-authored papers 8

Benjamin M Good

Lawrence Berkeley National Laboratory

Co-authored papers 7

Tim Putman

University of Colorado

Co-authored papers 6

Ginger Tsueng

The Scripps Research Institute

Co-authored papers 5

Serge Batalov

Co-authored papers 5

Gregory S Stupp

The Scripps Research Institute

Co-authored papers 4

Andra Waagmeester

Maastricht University

Co-authored papers 4

Kim M Summers

Mater Research Institute-University of Queensland, Translational Research Institute

Co-authored papers 4

David A Hume

Mater Research Institute-UQ, Translational Research Institute

Co-authored papers 4

Obi L Griffith

Washington University

Co-authored papers 4

Jiwen Xin

The Scripps Research Institute

Co-authored papers 3

Benjamin J Ainscough

McDonnell Genome Institute, Washington University in St Louis School of Medicine

Co-authored papers 2

Kevin R Coombes

Medical College of Georgia

Co-authored papers 2

Ali Torkamani

Scripps Science Institute

Co-authored papers 2

Anthony P Orth

Genomics Institute of the Novartis Research Foundation

Co-authored papers 2

Kristina Hanspers

Gladstone Institutes

Co-authored papers 2

Alan L Archibald

The Roslin Institute and R(D)SVS, University of Edinburgh

Co-authored papers 2

Tom C Freeman

The Roslin Institute, University of Edinburgh

Co-authored papers 2

William F Symmans

Co-authored papers 2

Keith A Baggerly

The University of Texas MD Anderson Cancer Center

Co-authored papers 2

Alexander R Pico

Institute of Data Science and Biotechnology, Gladstone Institutes

Co-authored papers 2

Malachi Griffith

Washington University

Co-authored papers 2

Nicholas C Spies

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 1

Andrew T Girvin

Co-authored papers 1

Michele Morris

University of Pittsburgh

Co-authored papers 1

Ghislain M C Bonamy

Prestige BioPharma Ltd

Co-authored papers 1

Amin Manna

Co-authored papers 1

Ashutosh K Tewari

Co-authored papers 1

Heath E Klock

Merck & Co., Inc.

Co-authored papers 1

1 - 30

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