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Author Details

Barbara J Wold
Merkin Institute for Translational Research, California Institute of Technology
1976
119
65
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37292896The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.bioRxiv2023
37852782Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells.Genome Res2023
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
37292896The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.bioRxiv2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
37546854Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.bioRxiv2023
37852782Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells.Genome Res2023
37546854Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.bioRxiv2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
34620214Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq.Genome Biol2021
34620214Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq.Genome Biol2021
35072136GA4GH: International policies and standards for data sharing across genomic research and healthcare.Cell Genom2021
35072136GA4GH: International policies and standards for data sharing across genomic research and healthcare.Cell Genom2021
32616518Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations.Genome Res2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
32728245The changing mouse embryo transcriptome at whole tissue and single-cell resolution.Nature2020
32616518Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations.Genome Res2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
32728245The changing mouse embryo transcriptome at whole tissue and single-cell resolution.Nature2020
31629685Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development.Cell Syst2019
31645363Dynamics of microRNA expression during mouse prenatal development.Genome Res2019
31629685Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development.Cell Syst2019
31645363Dynamics of microRNA expression during mouse prenatal development.Genome Res2019
29531064Reconstructing a metazoan genetic pathway with transcriptome-wide epistasis measurements.Proc Natl Acad Sci U S A2018
29531064Reconstructing a metazoan genetic pathway with transcriptome-wide epistasis measurements.Proc Natl Acad Sci U S A2018
29206104The Human Cell Atlas.Elife2017
29206104The Human Cell Atlas.Elife2017
27702788Mapping a multiplexed zoo of mRNA expression.Development2016
27702788Mapping a multiplexed zoo of mRNA expression.Development2016
25575081Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming.Cell Stem Cell2015
25805138Pitfalls of mapping high-throughput sequencing data to repetitive sequences: Piwi's genomic targets still not identified.Dev Cell2015
25575081Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming.Cell Stem Cell2015
26174866The NIH BD2K center for big data in translational genomics.J Am Med Inform Assoc2015
26174866The NIH BD2K center for big data in translational genomics.J Am Med Inform Assoc2015
25805138Pitfalls of mapping high-throughput sequencing data to repetitive sequences: Piwi's genomic targets still not identified.Dev Cell2015
24465428Evidence for site-specific occupancy of the mitochondrial genome by nuclear transcription factors.PLoS One2014
25411051A ratiometric-based measure of gene co-expression.BMC Bioinformatics2014
25409824A comparative encyclopedia of DNA elements in the mouse genome.Nature2014
25275169Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease.Proc Natl Acad Sci U S A2014
24347632Large-scale quality analysis of published ChIP-seq data.G3 (Bethesda)2014
24299736From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.Genome Res2014
24465428Evidence for site-specific occupancy of the mitochondrial genome by nuclear transcription factors.PLoS One2014
24753594Defining functional DNA elements in the human genome.Proc Natl Acad Sci U S A2014
24919486Fully automated high-throughput chromatin immunoprecipitation for ChIP-seq: identifying ChIP-quality p300 monoclonal antibodies.Sci Rep2014
25411051A ratiometric-based measure of gene co-expression.BMC Bioinformatics2014
25409824A comparative encyclopedia of DNA elements in the mouse genome.Nature2014
25275169Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease.Proc Natl Acad Sci U S A2014
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Collaborators

Brian A Williams
Co-authored papers 28
Ali Mortazavi
Co-authored papers 24
Georgi K Marinov
Co-authored papers 18
Richard M Myers
HudsonAlpha Institute for Biotechnology
Co-authored papers 17
Diane Trout
Co-authored papers 12
Thomas R Gingeras
Stanley Institute for Cognitive Genomics
Co-authored papers 11
Roderic Guig??
Barcelona Institute of Science and Technology
Co-authored papers 11
Anshul Kundaje
Stanford University.
Co-authored papers 9
Michael Snyder
Stanford University
Co-authored papers 9
Mark Gerstein
Yale University
Co-authored papers 8
Alexander Dobin
Co-authored papers 8
John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 8
Ross C Hardison
Co-authored papers 8
Manolis Kellis
Massachusetts Institute of Technology
Co-authored papers 7
Peter B Dervan
Co-authored papers 7
Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 7
Carrie A Davis
Stanford University
Co-authored papers 7
Zhiping Weng
University of Massachusetts Medical School
Co-authored papers 6
Florencia Pauli
Co-authored papers 6
David M Gilbert
Co-authored papers 6
Kevin P White
Co-authored papers 5
Peggy J Farnham
Keck School of Medicine of USC
Co-authored papers 5
Gregory E Crawford
Center for Genomic & Computational Biology, Duke University
Co-authored papers 5
Paul W Sternberg
California Institute of Technology
Co-authored papers 5
Bradley E Bernstein
Broad Institute of MIT and Harvard
Co-authored papers 5
J Michael Cherry
Stanford University
Co-authored papers 5
Eric H Davidson
California Institute of Technology
Co-authored papers 5
Job Dekker
University of Massachusetts Chan Medical School
Co-authored papers 5
Michael J Pazin
Co-authored papers 5
Jason Gertz
Huntsman Cancer Institute, University of Utah
Co-authored papers 4
Release 1.2