Author details

Full Name

Berit Lilje

Affiliation

Statens Serum Institut

ORCID

Career Start Year

2014

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37993692	In the eye of the ophthalmologist: the corneal microbiome in microbial keratitis.	Graefes Arch Clin Exp Ophthalmol	2024
37595295	Predictive metagenomic analysis identifies specific bacterial metabolic pathways in hidradenitis suppurativa tunnels.	J Eur Acad Dermatol Venereol	2024
34877605	Skin Microbiome in Patients with Hand Eczema and Healthy Controls: A Three-week Prospective Study.	Acta Derm Venereol	2022
33887725	Shifts in the Skin Microbiota after UVB Treatment in Adult Atopic Dermatitis.	Dermatology	2022
34209190	<i>Escherichia coli</i> Causing Recurrent Urinary Tract Infections: Comparison to Non-Recurrent Isolates and Genomic Adaptation in Recurrent Infections.	Microorganisms	2021
33669791	Staphylococcal Communities on Skin Are Associated with Atopic Dermatitis and Disease Severity.	Microorganisms	2021
32456821	Spread of LA-MRSA CC398 in Danish mink (Neovison vison) and mink farm workers.	Vet Microbiol	2020
33024212	Molecular characteristics of Staphylococcus aureus associated prosthetic joint infections after hip fractures treated with hemiarthroplasty: a retrospective genome-wide association study.	Sci Rep	2020
33045169	eHealth: Disease activity measures are related to the faecal gut microbiota in adult patients with ulcerative colitis.	Scand J Gastroenterol	2020
32722712	Changes in the vaginal microbiota following antibiotic treatment for Mycoplasma genitalium, Chlamydia trachomatis and bacterial vaginosis.	PLoS One	2020
32667872	Genomic analyses of <i>Staphylococcus aureus</i> clonal complex 45 isolates does not distinguish nasal carriage from bacteraemia.	Microb Genom	2020
32611695	Evolution and Population Dynamics of Clonal Complex 152 Community-Associated Methicillin-Resistant <i>Staphylococcus aureus</i>.	mSphere	2020
32353071	Investigation of the human nasal microbiome in persons with long- and short-term exposure to methicillin-resistant Staphylococcus aureus and other bacteria from the pig farm environment.	PLoS One	2020
32430467	Emergence of Enteroaggregative Escherichia coli within the ST131 Lineage as a Cause of Extraintestinal Infections.	mBio	2020
30557454	The biomarker potential of cell-free microRNA from cerebrospinal fluid in Parkinsonian Syndromes.	Mov Disord	2019
31329473	The microbiome reflects diagnosis and predicts disease severity in paediatric onset inflammatory bowel disease.	Scand J Gastroenterol	2019
30651401	Diversity and Population Overlap between Avian and Human Escherichia coli Belonging to Sequence Type 95.	mSphere	2019
28833590	Moderate to severe hidradenitis suppurativa patients do not have an altered bacterial composition in peripheral blood compared to healthy controls.	J Eur Acad Dermatol Venereol	2018
29695774	Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies.	Nat Commun	2018
29344612	Association of Disease Severity With Skin Microbiome and Filaggrin Gene Mutations in Adult Atopic Dermatitis.	JAMA Dermatol	2018
27650187	Report of mecC-carrying MRSA in domestic swine.	J Antimicrob Chemother	2017
28345861	Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo.	ACS Nano	2017
29208121	Whole-genome sequencing of bloodstream Staphylococcus aureus isolates does not distinguish bacteraemia from endocarditis.	Microb Genom	2017
29031453	Whole-genome comparison of urinary pathogenic Escherichia coli and faecal isolates of UTI patients and healthy controls.	Int J Med Microbiol	2017
29061750	Dissemination and Characteristics of a Novel Plasmid-Encoded Carbapenem-Hydrolyzing Class D Î²-Lactamase, OXA-436, Found in Isolates from Four Patients at Six Different Hospitals in Denmark.	Antimicrob Agents Chemother	2017
28541565	Emergence of vanA Enterococcus faecium in Denmark, 2005-15.	J Antimicrob Chemother	2017
28538949	The Follicular Skin Microbiome in Patients With Hidradenitis Suppurativa and Healthy Controls.	JAMA Dermatol	2017
28693615	Genome analysis of Clostridium perfringens isolates from healthy and necrotic enteritis infected chickens and turkeys.	BMC Res Notes	2017
28662761	Genomic investigation of a suspected outbreak of Legionella pneumophila ST82 reveals undetected heterogeneity by the present gold-standard methods, Denmark, July to November 2014.	Euro Surveill	2017
28053217	High Interlaboratory Reproducibility and Accuracy of Next-Generation-Sequencing-Based Bacterial Genotyping in a Ring Trial.	J Clin Microbiol	2017
28049430	Spread of avian pathogenic Escherichia coli ST117 O78:H4 in Nordic broiler production.	BMC Genomics	2017
27494182	Diurnal Variations of Human Circulating Cell-Free Micro-RNA.	PLoS One	2016
27151980	Corrigendum: Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes.	Genes Dev	2016
25678556	Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.	Science	2015
24299735	Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome.	Genome Res	2014
24670764	A promoter-level mammalian expression atlas.	Nature	2014
24670763	An atlas of active enhancers across human cell types and tissues.	Nature	2014
24990076	Identification of TNF-Î±-responsive promoters and enhancers in the intestinal epithelial cell model Caco-2.	DNA Res	2014
25403180	Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes.	Genes Dev	2014

1 - 39 of 39

Stephen Wandro

Center for Microbiome Innovation, University of California San Diego

Career Start Year 2017

Number of shared co-authors 0

Kaitlin J Flynn

Center for Systems Immunology, Benaroya Research Institute at Virginia Mason

Career Start Year 2014

Number of shared co-authors 0

Allyson L Byrd

Genentech Inc.

Career Start Year 2014

Number of shared co-authors 0

Paul I Costea

Weizmann Institute of Science

Career Start Year 2012

Number of shared co-authors 0

Susan Bullman

Fred Hutchinson Cancer Center

Career Start Year 2011

Number of shared co-authors 1

Pedro Belda-Ferre

University of California San Diego

Career Start Year 2011

Number of shared co-authors 0

Edoardo Pasolli

University of Naples Federico II

Career Start Year 2010

Number of shared co-authors 4

Dan Knights

University of Minnesota

Career Start Year 2010

Number of shared co-authors 1

Chien-Chi Lo

Los Alamos National Laboratory

Career Start Year 2009

Number of shared co-authors 1

Austin D Swafford

Center for Microbiome Innovation, University of California San Diego

Career Start Year 2008

Number of shared co-authors 0

Nicola Segata

University of Trento

Career Start Year 2008

Number of shared co-authors 3

Heather Huot Creasy

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2007

Number of shared co-authors 1

Julia Oh

National Human Genome Research Institute

Career Start Year 2007

Number of shared co-authors 0

Brandi L Cantarel

University of Texas Southwestern Medical Center

Career Start Year 2006

Number of shared co-authors 0

Curtis Huttenhower

Broad Institute of MIT and Harvard

Career Start Year 2006

Number of shared co-authors 3

Torsten Seemann

University of Melbourne

Career Start Year 2006

Number of shared co-authors 0

Douglas W Fadrosh

University of California san francisco

Career Start Year 2005

Number of shared co-authors 0

Manimozhiyan Arumugam

Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen

Career Start Year 2004

Number of shared co-authors 2

Morgan G I Langille

Dalhousie University

Career Start Year 2004

Number of shared co-authors 2

Kyle Bittinger

Children's Hospital of Philadelphia

Career Start Year 2004

Number of shared co-authors 0

John A McCulloch

Center for Cancer Research, National Cancer Institute

Career Start Year 2003

Number of shared co-authors 0

Ami S Bhatt

Stanford University

Career Start Year 2003

Number of shared co-authors 1

David T Pride

University of California San Diego

Career Start Year 2001

Number of shared co-authors 0

Aye Wollam

McDonnell Genome Institute, Washington University School of Medicine

Career Start Year 2000

Number of shared co-authors 0

Christian Hoffmann

Food Research Center (FoRC)

Career Start Year 1998

Number of shared co-authors 0

Rob Knight

University of California

Career Start Year 1998

Number of shared co-authors 4

Nicholas J Loman

University of Birmingham

Career Start Year 1998

Number of shared co-authors 1

Eric J Alm

Massachusetts Institute of Technology 21 Ames St. Cambridge

Career Start Year 1998

Number of shared co-authors 0

Anthony A Fodor

University of North Carolina at Charlotte

Career Start Year 1997

Number of shared co-authors 1

Karen E Nelson

J. Craig Venter Institute, 9605 Medical Center Drive

Career Start Year 1995

Number of shared co-authors 2

row(s) 1 - 30 of 30

Albin Sandelin

University of Copenhagen

Co-authored papers 9

Robin Andersson

University of Copenhagen

Co-authored papers 7

Yun Chen

Hospital of Obstetrics and Gynecology, Fudan University

Co-authored papers 6

Morana Vitezic

University of Copenhagen

Co-authored papers 5

Jette Bornholdt

University of Copenhagen

Co-authored papers 4

Mette Boyd

University of Copenhagen

Co-authored papers 4

Carsten O Daub

International Institute of Molecular and Cell Biology in Warsaw

Co-authored papers 3

Ilka Hoof

LEO Pharma

Co-authored papers 3

Yoshihide Hayashizaki

Center for Integrative Medical Sciences

Co-authored papers 3

Jun Kawai

RIKEN Center for Integrative Medical Sciences

Co-authored papers 3

John Kenneth Baillie

Roslin Institute, University of Edinburgh

Co-authored papers 3

Masayoshi Itoh

RIKEN Center for Integrative Medical Sciences

Co-authored papers 3

Erik Arner

RIKEN Center for Integrative Medical Sciences (IMS)

Co-authored papers 3

Torben Heick Jensen

Universitetsbyen 81, Aarhus University

Co-authored papers 3

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 3

Harukazu Suzuki

RIKEN Center for Integrative Medical Sciences

Co-authored papers 3

Eivind Valen

University of Bergen

Co-authored papers 3

Mette J??rgensen

University of Copenhagen

Co-authored papers 3

Nicolas Bertin

University Bordeaux, CNRS