Skip to Main Content

Author Details

Casey S Greene
Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine
0000-0001-8713-9213
1968
265
53
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37503097BuDDI: <i>Bu</i><i>lk</i><i>D</i><i>econvolution with</i><i>D</i><i>omain</i><i>I</i><i>nvariance</i> to predict cell-type-specific perturbations from bulk.bioRxiv2024
36034485Application of Traditional Vaccine Development Strategies to SARS-CoV-2.ArXiv2023
37864274Performance of computational algorithms to deconvolve heterogeneous bulk ovarian tumor tissue depends on experimental factors.Genome Biol2023
37961178Molecular subtypes of high-grade serous ovarian cancer across racial groups and gene expression platforms.bioRxiv2023
37662412Analysis of <i>Pseudomonas aeruginosa</i> transcription in an <i>ex vivo</i> cystic fibrosis sputum model identifies metal restriction as a gene expression stimulus.bioRxiv2023
37689782Projecting genetic associations through gene expression patterns highlights disease etiology and drug mechanisms.Nat Commun2023
37577575MousiPLIER: A Mouse Pathway-Level Information Extractor Model.bioRxiv2023
37873416Integration of 168,000 samples reveals global patterns of the human gut microbiome.bioRxiv2023
37492101OpenPBTA: The Open Pediatric Brain Tumor Atlas.Cell Genom2023
35597605Commentary on "Temporomandibular Disorders: Priorities for Research and Care": Implications for the readership of the Journal of ProstheticDentistry.J Prosthet Dent2023
37389835Overtreatment "Successes"--What Are the Negative Consequences for Patients, Dentists, and the Profession?J Oral Facial Pain Headache2023
37248386Machine learning in rare disease.Nat Methods2023
37147665Changing word meanings in biomedical literature reveal pandemics and new technologies.BioData Min2023
37039380Temporomandibular disorders: current status of research, education, policies, and its impact on clinicians in the United States of America.Quintessence Int2023
37235472Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality.Cell Rep2023
36972227The effect of non-linear signal in classification problems using gene expression.PLoS Comput Biol2023
37070209MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes.Nucleic Acids Res2023
36883888Remarks on "Temporomandibular Disorders: Priorities for Research and Care": how will Chile advance?Medwave2023
36747665A publishing infrastructure for AI-assisted academic authoring.bioRxiv2023
36541762Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14.mSystems2023
36541761Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia.mSystems2023
36711900The Field-Dependent Nature of PageRank Values in Citation Networks.bioRxiv2023
36711569The probability of edge existence due to node degree: a baseline for network-based predictions.bioRxiv2023
36861991Application of Traditional Vaccine Development Strategies to SARS-CoV-2.mSystems2023
36861992The Coming of Age of Nucleic Acid Vaccines during COVID-19.mSystems2023
34226022Letter to the editor in regard to the article "Occlusal devices in France: An assessment of professional practice".J Prosthet Dent2022
37503959Hetnet connectivity search provides rapid insights into how biomedical entities are related.Gigascience2022
35547240Molecular and Serologic Diagnostic Technologies for SARS-CoV-2.ArXiv2022
35346418Commentary on Temporomandibular Disorders: Priorities for Research and Care: State-of-the-science for both general dentists and specialists.J Am Dent Assoc2022
35761387Widespread redundancy in -omics profiles of cancer mutation states.Genome Biol2022
35760813GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.Nat Commun2022
35491258Recently released report by The National Academies of Sciences, Engineering, and Medicine proposes significant changes in understanding and managing temporomandibular disorders.J Prosthet Dent2022
35690590RE: Paper by Fornai C, Tester I, Parlett K, Basili C, Costa HN. J Oral Rehabil. 2022 Apr 4. [Online ahead of print].J Oral Rehabil2022
35962105A commentary on Temporomandibular disorders: priorities for research and care - bridging from the US to the UK.Br Dent J2022
36193991wenda_gpu: fast domain adaptation for genomic data.Bioinformatics2022
36016717Using genome-wide expression compendia to study microorganisms.Comput Struct Biotechnol J2022
36258252Expanding a database-derived biomedical knowledge graph via multi-relation extraction from biomedical abstracts.BioData Min2022
36216026SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses.Genomics Proteomics Bioinformatics2022
33674035Mismanagement of dentoalveolar pain: What are the clinical consequences?J Am Dent Assoc2022
35076276Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure".mSystems2022
34890145Human Intrigue: Meta-analysis approaches for big questions with big data while shaking up the peer review process.Pac Symp Biocomput2022
35012805Temporomandibular disorders and orthodontics: What have we learned from 1992-2022?Am J Orthod Dentofacial Orthop2022
35039653Computational audits combat disparities in recognition.Nat Hum Behav2022
35143491Ten simple rules for large-scale data processing.PLoS Comput Biol2022
35104289Examining linguistic shifts between preprints and publications.PLoS Biol2022
33397451Genome-wide association study implicates novel loci and reveals candidate effector genes for longitudinal pediatric bone accrual.Genome Biol2021
35391741Parameterized algorithms for identifying gene co-expression modules via weighted clique decomposition.Proc 2021 SIAM Conf Appl Comput Discret Algorithms (2021)2021
33789113Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality.Cell Rep2021
33526513Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer.Cancer Res2021
34555325Analysis of scientific society honors reveals disparities.Cell Syst2021
  • 1 - 50 of 265

Recommended Authors

Oregon Health & Science University
Career Start Year 2016
Number of shared co-authors 0
Charite-Universitatsmedizin Berlin
Career Start Year 2010
Number of shared co-authors 0
Oregon Health & Science University (OHSU)
Career Start Year 2008
Number of shared co-authors 5
University of California at Davis School of Medicine
Career Start Year 2008
Number of shared co-authors 2
Director of Clinical Innovation
Career Start Year 2006
Number of shared co-authors 0
Rela Hospital
Career Start Year 2004
Number of shared co-authors 1
Seoul National University
Career Start Year 2003
Number of shared co-authors 8
Oregon Health & Science University School of Medicine
Career Start Year 2003
Number of shared co-authors 0
Children's Hospital Boston
Career Start Year 2001
Number of shared co-authors 1
McGill University
Career Start Year 2001
Number of shared co-authors 2
College of Medicine, University of Florida
Career Start Year 2001
Number of shared co-authors 5
Harvard School of Dental Medicine
Career Start Year 2001
Number of shared co-authors 1
University of Colorado Anschutz Medical Campus
Career Start Year 2001
Number of shared co-authors 8
Keck School of Medicine of USC, University of Southern
Career Start Year 1999
Number of shared co-authors 10
National Taiwan University
Career Start Year 1999
Number of shared co-authors 2
The University of Oklahoma Health Sciences Center
Career Start Year 1999
Number of shared co-authors 2
University of Washington School of Medicine
Career Start Year 1998
Number of shared co-authors 1
China-Japan Friendship Hospital
Career Start Year 1997
Number of shared co-authors 3
David Geffen School of Medicine at University of California los angeles
Career Start Year 1997
Number of shared co-authors 11
University of Utah Health Sciences Center
Career Start Year 1993
Number of shared co-authors 0
Eberhard Karls University of Tuebingen
Career Start Year 1993
Number of shared co-authors 0
Tata Medical Center
Career Start Year 1993
Number of shared co-authors 0
Boston University School of Medicine
Career Start Year 1991
Number of shared co-authors 4
Renaissance Computing Institute, University of North Carolina
Career Start Year 1985
Number of shared co-authors 1
Hoag Memorial Hospital Presbyterian
Career Start Year 1983
Number of shared co-authors 25
Harvard Medical School
Career Start Year 1983
Number of shared co-authors 20
University of Michigan Medical School ann arbor
Career Start Year 1977
Number of shared co-authors 2
Center for Andrology and Sexual Medicine, Viet Duc University Hospital
Career Start Year 1970
Number of shared co-authors 0
Weizmann Institute of Science
Career Start Year 1970
Number of shared co-authors 3

Collaborators

Co-authored papers 104
Cedars-Sinai Medical Center
Co-authored papers 22
Broad Institute of MIT and Harvard
Co-authored papers 18
Geisel School of Medicine at Dartmouth
Co-authored papers 14
University of Pennsylvania
Co-authored papers 12
University of Pennsylvania
Co-authored papers 12
Alex's Lemonade Stand Foundation
Co-authored papers 12
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 10
Geisel School of Medicine at Dartmouth
Co-authored papers 9
Huntsman Cancer Institute, University of Utah
Co-authored papers 8
University of Pennsylvania
Co-authored papers 8
College of Engineering and Center for Quantitative Biology, Peking University
Co-authored papers 7
University of Pennsylvania
Co-authored papers 6
Center for Health AI, University of Colorado School of Medicine
Co-authored papers 6
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 6
University of Pennsylvania
Co-authored papers 5
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 5
Flatiron Institute, Simons Foundation
Co-authored papers 5
University of Michigan ann arbor
Co-authored papers 4
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 4
Geisel School of Medicine at Dartmouth
Co-authored papers 4
University of Pennsylvania
Co-authored papers 4
Mayo Clinic College of Medicine
Co-authored papers 4
Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia
Co-authored papers 4
Epigenetics Institute, University of Pennsylvania
Co-authored papers 4
University of Chicago
Co-authored papers 4
University of California davis
Co-authored papers 4
Collegeville
Co-authored papers 4
Rollins School of Public Health, Emory University
Co-authored papers 4
Geisel School of Medicine, Dartmouth College
Co-authored papers 4