Author details

Full Name

Ryan Tewhey

Affiliation

University of Maine

ORCID

Career Start Year

2007

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37930192	Three linked variants have opposing regulatory effects on isovaleryl-CoA dehydrogenase gene expression.	Hum Mol Genet	2024
37930192	Three linked variants have opposing regulatory effects on isovaleryl-CoA dehydrogenase gene expression.	Hum Mol Genet	2024
36808133	Widespread perturbation of ETS factor binding sites in cancer.	Nat Commun	2023
36808133	Widespread perturbation of ETS factor binding sites in cancer.	Nat Commun	2023
37104592	The functional and evolutionary impacts of human-specific deletions in conserved elements.	Science	2023
37104592	The functional and evolutionary impacts of human-specific deletions in conserved elements.	Science	2023
34907347	Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows.	Nat Microbiol	2022
35513721	Prioritization of autoimmune disease-associated genetic variants that perturb regulatory element activity in T cells.	Nat Genet	2022
35480627	Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA.	Cell Rep Med	2022
36777181	Whole-genome functional characterization of RE1 silencers using a modified massively parallel reporter assay.	Cell Genom	2022
34907347	Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows.	Nat Microbiol	2022
35480627	Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA.	Cell Rep Med	2022
35513721	Prioritization of autoimmune disease-associated genetic variants that perturb regulatory element activity in T cells.	Nat Genet	2022
36777181	Whole-genome functional characterization of RE1 silencers using a modified massively parallel reporter assay.	Cell Genom	2022
34326544	Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR-FlowFISH.	Nat Genet	2021
34326544	Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR-FlowFISH.	Nat Genet	2021
34497403	Author Correction: Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR-FlowFISH.	Nat Genet	2021
34898596	CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data.	PLoS Comput Biol	2021
34642698	Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA.	medRxiv	2021
34475398	Functional characterization of T2D-associated SNP effects on baseline and ER stress-responsive Î² cell transcriptional activation.	Nat Commun	2021
34898596	CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data.	PLoS Comput Biol	2021
34497403	Author Correction: Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR-FlowFISH.	Nat Genet	2021
34642698	Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA.	medRxiv	2021
34475398	Functional characterization of T2D-associated SNP effects on baseline and ER stress-responsive Î² cell transcriptional activation.	Nat Commun	2021
32144282	Prioritizing disease and trait causal variants at the TNFAIP3 locus using functional and genomic features.	Nat Commun	2020
32144282	Prioritizing disease and trait causal variants at the TNFAIP3 locus using functional and genomic features.	Nat Commun	2020
33058756	A MicroRNA Linking Human Positive Selection and Metabolic Disorders.	Cell	2020
33058756	A MicroRNA Linking Human Positive Selection and Metabolic Disorders.	Cell	2020
29474912	Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay.	Cell	2018
29474912	Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay.	Cell	2018
28220625	Predicting gene expression in massively parallel reporter assays: A comparative study.	Hum Mutat	2017
28220625	Predicting gene expression in massively parallel reporter assays: A comparative study.	Hum Mutat	2017
28137873	Systematic dissection of genomic features determining transcription factor binding and enhancer function.	Proc Natl Acad Sci U S A	2017
28137873	Systematic dissection of genomic features determining transcription factor binding and enhancer function.	Proc Natl Acad Sci U S A	2017
27259153	Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay.	Cell	2016
27259153	Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay.	Cell	2016
26501192	Genome-wide identification of microRNAs regulating cholesterol and triglyceride homeostasis.	Nat Med	2015
26276630	Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus.	Cell	2015
26501192	Genome-wide identification of microRNAs regulating cholesterol and triglyceride homeostasis.	Nat Med	2015
26276630	Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus.	Cell	2015
23999524	Evidence for the role of EPHX2 gene variants in anorexia nervosa.	Mol Psychiatry	2014
25403361	Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples.	Genome Biol	2014
23999524	Evidence for the role of EPHX2 gene variants in anorexia nervosa.	Mol Psychiatry	2014
24130309	De novo finished 2.8 Mbp Staphylococcus aureus genome assembly from 100 bp short and long range paired-end reads.	Bioinformatics	2014
24915435	Mechanisms of linezolid resistance among coagulase-negative staphylococci determined by whole-genome sequencing.	mBio	2014
24901334	A high resolution case study of a patient with recurrent Plasmodium vivax infections shows that relapses were caused by meiotic siblings.	PLoS Negl Trop Dis	2014
25403361	Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples.	Genome Biol	2014
24901334	A high resolution case study of a patient with recurrent Plasmodium vivax infections shows that relapses were caused by meiotic siblings.	PLoS Negl Trop Dis	2014
24915435	Mechanisms of linezolid resistance among coagulase-negative staphylococci determined by whole-genome sequencing.	mBio	2014
24130309	De novo finished 2.8 Mbp Staphylococcus aureus genome assembly from 100 bp short and long range paired-end reads.	Bioinformatics	2014

1 - 50 of 84

Goo Jun

University of Texas Health Science Center at Houston

Career Start Year 2012

Number of shared co-authors 10

Konrad J Karczewski

Broad Institute of MIT and Harvard

Career Start Year 2010

Number of shared co-authors 17

Martin Kircher

Berlin Institute of Health (BIH) at Charite-Universitatsmedizin Berlin

Career Start Year 2008

Number of shared co-authors 3

Jeffrey G Reid

Regeneron Pharmaceuticals, Inc.

Career Start Year 2007

Number of shared co-authors 7

James G D Prendergast

The Roslin Institute, The University of Edinburgh

Career Start Year 2005

Number of shared co-authors 0

Alicia Hawes

Regeneron Pharmaceuticals Inc.

Career Start Year 2004

Number of shared co-authors 12

Klaudia Walter

Wellcome Sanger Institute

Career Start Year 2004

Number of shared co-authors 7

Robert Sebra

Icahn School of Medicine at Mount Sinai

Career Start Year 2004

Number of shared co-authors 1

Degui Zhi

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 8

Shane McCarthy

Wellcome Sanger Institute

Career Start Year 2004

Number of shared co-authors 10

Lachlan J M Coin

The Peter Doherty Institute for Infection and Immunity, The University of Melbourne

Career Start Year 2003

Number of shared co-authors 11

Christie L Kovar

Baylor College of Medicine

Career Start Year 2002

Number of shared co-authors 8

Yufeng Shen

Columbia University

Career Start Year 2002

Number of shared co-authors 3

Fuli Yu

East China University of Science and Technology

Career Start Year 2002

Number of shared co-authors 20

Harm van Bakel

Icahn School of Medicine at Mount Sinai

Career Start Year 2002

Number of shared co-authors 2

Brent S Pedersen

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2001

Number of shared co-authors 0

Michael C Zody

Broad Institute of Harvard and MIT

Career Start Year 2001

Number of shared co-authors 19

Nancy F Hansen

National Human Genome Research Institute, National Institutes of Health

Career Start Year 2000

Number of shared co-authors 5

Kirsten McLay

Inivata Ltd.

Career Start Year 1999

Number of shared co-authors 18

Shin Lin

University of Washington School of Medicine

Career Start Year 1998

Number of shared co-authors 19

Jay Shendure

University of Washington

Career Start Year 1996

Number of shared co-authors 9

Jared C Roach

Institute for Systems Biology

Career Start Year 1995

Number of shared co-authors 8

Michael E Zwick

Rutgers University-New Brunswick, Rutgers University

Career Start Year 1989

Number of shared co-authors 2

Gustavo Glusman

Institute for Systems Biology

Career Start Year 1988

Number of shared co-authors 7

Donna M Muzny

Baylor College of Medicine

Career Start Year 1988

Number of shared co-authors 26

Pui-Yan Kwok

Cardiovascular Research Institute, University of California San Francisco

Career Start Year 1987

Number of shared co-authors 21

Richard A Gibbs

Baylor College of Medicine

Career Start Year 1987

Number of shared co-authors 25

James C Mullikin

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1985

Number of shared co-authors 21

Richard K Wilson

The Ohio State University

Career Start Year 1983

Number of shared co-authors 22

Deborah A Nickerson

University of Washington

Career Start Year 1976

Number of shared co-authors 18

row(s) 1 - 30 of 30

Pardis C Sabeti

Harvard University

Co-authored papers 14

Nicholas J Schork

University of California San Diego

Co-authored papers 11

Eric J Topol

Universidade Federal de Sao Paulo

Co-authored papers 8

Steven K Reilly

Co-authored papers 8

Vikas Bansal

University of California San Diego

Co-authored papers 7

Adrianne Gladden-Young

Co-authored papers 5

Eric S Lander

Vanderbilt-Ingram Cancer Center, Vanderbilt University

Co-authored papers 5

Hilary K Finucane

Co-authored papers 4

Ali Torkamani

Scripps Science Institute

Co-authored papers 4

Michael L Stitzel

Institute for Systems Genomics

Co-authored papers 4

Tarjei S Mikkelsen

Harvard University, USA Broad Institute, USA Harvard Stem Cell Institute

Co-authored papers 4

Jacob C Ulirsch

Co-authored papers 4

Daniel J Park

Broad Institute of MIT and Harvard

Co-authored papers 3

Masahiro Kanai

Co-authored papers 3

Olivier Harismendy

University of California

Co-authored papers 3

Stephen F Schaffner

Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard

Co-authored papers 3

Kelly A Frazer

University of California, USA Institute for Genomic Medicine

Co-authored papers 3

Phillip Pham

Duke University

Co-authored papers 2

Robert F Garry

Tulane University School of Medicine

Co-authored papers 2

Thomas E Hughes

Co-authored papers 2

Bo Isomaa

Co-authored papers 2

Victor Nizet

university of california san diego School of Medicine

Co-authored papers 2

Ondrej Libiger

The Qualcomm Institute, University of California

Co-authored papers 2

Valeriya Lyssenko

Co-authored papers 2

Sekar Kathiresan

Co-authored papers 2

Nir Hacohen

Broad Institute of MIT and Harvard

Co-authored papers 2

Raymond T Chung

Massachusetts General Hospital and Harvard Medical School

Co-authored papers 2

Guangfa Zhang

Sichuan Agricultural University

Co-authored papers 2

David R Peaper

Yale University School of Medicine

Co-authored papers 2

Nathan D Grubaugh

Yale School of Public Health

Co-authored papers 2

1 - 30

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