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Author Details

Piero Carninci
RIKEN Center for Integrative Medical Sciences
1990
364
95
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36411359Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learning.Nat Biomed Eng2023
36411359Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learning.Nat Biomed Eng2023
37608799ZENBU-Reports: a graphical web-portal builder for interactive visualization and dissemination of genome-scale data.NAR Genom Bioinform2023
37648852Gut microbial carbohydrate metabolism contributes to insulin resistance.Nature2023
37794265The status of the human gene catalogue.Nature2023
37398314CapTrap-Seq: A platform-agnostic and quantitative approach for high-fidelity full-length RNA transcript sequencing.bioRxiv2023
36941762A new layer of complexity in the human genome: Somatic recombination of repeat elements.Clin Transl Med2023
37187707SINEUP non-coding RNA activity depends on specific N6-methyladenosine nucleotides.Mol Ther Nucleic Acids2023
36472244Piwil2 (Mili) sustains neurogenesis and prevents cellular senescence in the postnatal hippocampus.EMBO Rep2023
36596869Long non-coding RNAs: definitions, functions, challenges and recommendations.Nat Rev Mol Cell Biol2023
37794265The status of the human gene catalogue.Nature2023
37648852Gut microbial carbohydrate metabolism contributes to insulin resistance.Nature2023
37608799ZENBU-Reports: a graphical web-portal builder for interactive visualization and dissemination of genome-scale data.NAR Genom Bioinform2023
37187707SINEUP non-coding RNA activity depends on specific N6-methyladenosine nucleotides.Mol Ther Nucleic Acids2023
37398314CapTrap-Seq: A platform-agnostic and quantitative approach for high-fidelity full-length RNA transcript sequencing.bioRxiv2023
36472244Piwil2 (Mili) sustains neurogenesis and prevents cellular senescence in the postnatal hippocampus.EMBO Rep2023
36941762A new layer of complexity in the human genome: Somatic recombination of repeat elements.Clin Transl Med2023
36596869Long non-coding RNAs: definitions, functions, challenges and recommendations.Nat Rev Mol Cell Biol2023
35228902Towards SINEUP-based therapeutics: Design of an <i>in vitro</i> synthesized SINEUP RNA.Mol Ther Nucleic Acids2022
36173306SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells.Bioinformatics2022
35961773Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs.Genome Res2022
35882231Recombination of repeat elements generates somatic complexity in human genomes.Cell2022
36070371Distinctive exercise-induced inflammatory response and exerkine induction in skeletal muscle of people with type 2 diabetes.Sci Adv2022
35486244Complete Transcriptome Analysis by 5'-End Single-Cell RNA-Seq with Random Priming.Methods Mol Biol2022
35789323Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.Nat Genet2022
35532806Lessons from the functional characterization of lncRNAs: introduction to mammalian genome special issue.Mamm Genome2022
36577377Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.Cell Rep2022
35228902Towards SINEUP-based therapeutics: Design of an <i>in vitro</i> synthesized SINEUP RNA.Mol Ther Nucleic Acids2022
35789323Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.Nat Genet2022
35532806Lessons from the functional characterization of lncRNAs: introduction to mammalian genome special issue.Mamm Genome2022
35486244Complete Transcriptome Analysis by 5'-End Single-Cell RNA-Seq with Random Priming.Methods Mol Biol2022
36577377Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.Cell Rep2022
36070371Distinctive exercise-induced inflammatory response and exerkine induction in skeletal muscle of people with type 2 diabetes.Sci Adv2022
36173306SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells.Bioinformatics2022
35961773Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs.Genome Res2022
35882231Recombination of repeat elements generates somatic complexity in human genomes.Cell2022
33211864FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.Nucleic Acids Res2021
34011993Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2021
33795334Antisense RNAs during early vertebrate development are divided in groups with distinct features.Genome Res2021
33568674LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C.Nat Commun2021
33711266Decoding Neuronal Diversification by Multiplexed Single-cell RNA-Seq.Stem Cell Reports2021
33211864FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.Nucleic Acids Res2021
34623427SINEUPs: a novel toolbox for RNA therapeutics.Essays Biochem2021
34675070Embryonic LTR retrotransposons supply promoter modules to somatic tissues.Genome Res2021
34382191Analysis of Enhancer-Promoter Interactions using CAGE and RADICL-Seq Technologies.Methods Mol Biol2021
34382184Low Quantity Single Strand CAGE (LQ-ssCAGE) Maps Regulatory Enhancers and Promoters.Methods Mol Biol2021
33795334Antisense RNAs during early vertebrate development are divided in groups with distinct features.Genome Res2021
33568674LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C.Nat Commun2021
33711266Decoding Neuronal Diversification by Multiplexed Single-cell RNA-Seq.Stem Cell Reports2021
34675070Embryonic LTR retrotransposons supply promoter modules to somatic tissues.Genome Res2021
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Collaborators

Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 214
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 90
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 84
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 82
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 80
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 64
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 46
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 46
Stefano Gustincich
Istituto Italiano di Tecnologia
Co-authored papers 41
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 39
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 36
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 35
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 34
Charles Plessy
Okinawa Institute of Science and Technology
Co-authored papers 31
Marina Lizio
Cerevance Ltd
Co-authored papers 30
Takahiro Arakawa
Tokyo University of Technology
Co-authored papers 30
Chikatoshi Kai
Co-authored papers 30
Albin Sandelin
University of Copenhagen
Co-authored papers 29
Yasushi Okazaki
Intractable Disease Research Center, Graduate School of Medicine, Juntendo University
Co-authored papers 27
Boris Lenhard
MRC London Institute of Medical Sciences
Co-authored papers 26
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 24
Shiro Fukuda
Graduate School of Medicine, Osaka University
Co-authored papers 22
Kazuhiro Shibata
Co-authored papers 21
Geoffrey J Faulkner
Mater Research Institute - University of Queensland
Co-authored papers 21
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 21
Christine A Wells
The University of Melbourne
Co-authored papers 20
Shintaro Katayama
Folkhalsan Research Center
Co-authored papers 20
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 19
Toshiyuki Shiraki
Co-authored papers 19
Nicolas Bertin
University Bordeaux, CNRS
Co-authored papers 18
Release 1.2