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Author Details

David Baker
University of Washington
1988
687
148
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37996753Accurate prediction of protein-nucleic acid complexes using RoseTTAFoldNA.Nat Methods2024
37996753Accurate prediction of protein-nucleic acid complexes using RoseTTAFoldNA.Nat Methods2024
36316485A split, conditionally active mimetic of IL-2 reduces the toxicity of systemic cytokine therapy.Nat Biotechnol2023
36316485A split, conditionally active mimetic of IL-2 reduces the toxicity of systemic cytokine therapy.Nat Biotechnol2023
37939083In vivo selection of synthetic nucleocapsids for tissue targeting.Proc Natl Acad Sci U S A2023
37845322Accurate computational design of three-dimensional protein crystals.Nat Mater2023
37667012Precisely patterned nanofibres made from extendable protein multiplexes.Nat Chem2023
37662224<i>De novo</i> design of buttressed loops for sculpting protein functions.bioRxiv2023
37590357Design of stimulus-responsive two-state hinge proteins.Science2023
37582367Single-cell census of human tooth development enables generation of human enamel.Dev Cell2023
37577478Rapid and automated design of two-component protein nanomaterials using ProteinMPNN.bioRxiv2023
37794071Nanoparticle display of prefusion coronavirus spike elicits S1-focused cross-reactive antibody response against diverse coronavirus subgenera.Nat Commun2023
37790440Computational design of sequence-specific DNA-binding proteins.bioRxiv2023
37632837De novo design of monomeric helical bundles for pH-controlled membrane lysis.Protein Sci2023
37704610De novo design of highly selective miniprotein inhibitors of integrins αvβ6 and αvβ8.Nat Commun2023
37873412Single-cell signaling analysis reveals that Major Vault Protein facilitates RasG12C inhibitor resistance.bioRxiv2023
37781607Designed Endocytosis-Triggering Proteins mediate Targeted Degradation.bioRxiv2023
37781598<i>De novo</i> designed Hsp70 activator dissolves intracellular condensates.bioRxiv2023
37695922Zero-shot mutation effect prediction on protein stability and function using RoseTTAFold.Protein Sci2023
38052802Design and structural validation of peptide-drug conjugate ligands of the kappa-opioid receptor.Nat Commun2023
37774705Synthetic Par polarity induces cytoskeleton asymmetry in unpolarized mammalian cells.Cell2023
37094170Exploiting conformational dynamics to modulate the function of designed proteins.Proc Natl Acad Sci U S A2023
37341421Design of Heme Enzymes with a Tunable Substrate Binding Pocket Adjacent to an Open Metal Coordination Site.J Am Chem Soc2023
37149653Improving de novo protein binder design with deep learning.Nat Commun2023
37027789Macrocyclic Octapeptide Binding and Inferences on Protein Substrate Binding to Histone Deacetylase 6.ACS Chem Biol2023
37024727Design of cell-type-specific hyperstable IL-4 mimetics via modular de novo scaffolds.Nat Chem Biol2023
36897987De novo design of small beta barrel proteins.Proc Natl Acad Sci U S A2023
36828268ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.J Mol Biol2023
37333359Blueprinting expandable nanomaterials with standardized protein building blocks.bioRxiv2023
37398374Hierarchical design of pseudosymmetric protein nanoparticles.bioRxiv2023
37398153<i>De novo</i> design of highly selective miniprotein inhibitors of integrins αvβ6 and αvβ8.bioRxiv2023
37398067De novo design of modular protein hydrogels with programmable intra- and extracellular viscoelasticity.bioRxiv2023
37079676Top-down design of protein architectures with reinforcement learning.Science2023
36888664Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains.Proc Natl Acad Sci U S A2023
36813896De novo design of luciferases using deep learning.Nature2023
36493355Reshaping de Novo Protein Switches into Bioresponsive Materials for Biomarker, Toxin, and Viral Detection.Adv Mater2023
37131790De novo design of energy transfer proteins housing excitonically coupled chlorophyll special pairs.Res Sq2023
37131615Computational design of non-porous, pH-responsive antibody nanoparticles.bioRxiv2023
36807264The Ï¿PA3 phage nucleus is enclosed by a self-assembling 2D crystalline lattice.Nat Commun2023
36627259Design of Diverse Asymmetric Pockets in <i>De Novo</i> Homo-oligomeric Proteins.Biochemistry2023
37066191Stepwise design of pseudosymmetric protein hetero-oligomers.bioRxiv2023
36802421Peptide-binding specificity prediction using fine-tuned protein structure prediction networks.Proc Natl Acad Sci U S A2023
36798377Massively parallel protein-protein interaction measurement by sequencing (MP3-seq) enables rapid screening of protein heterodimers.bioRxiv2023
37433327De novo design of protein structure and function with RFdiffusion.Nature2023
36993355Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies.bioRxiv2023
37503272Hierarchical design of pseudosymmetric protein nanoparticles.Res Sq2023
37667012Precisely patterned nanofibres made from extendable protein multiplexes.Nat Chem2023
37632837De novo design of monomeric helical bundles for pH-controlled membrane lysis.Protein Sci2023
37662224<i>De novo</i> design of buttressed loops for sculpting protein functions.bioRxiv2023
37590357Design of stimulus-responsive two-state hinge proteins.Science2023
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Collaborators

Frank DiMaio
University of Washington
Co-authored papers 64
Lauren Carter
Co-authored papers 38
Neil P King
Co-authored papers 33
Gaetano T Montelione
Rensselaer Polytechnic Institute
Co-authored papers 27
Tanja Kortemme
University of California san francisco
Co-authored papers 26
Brian Kuhlman
Co-authored papers 24
Hahnbeom Park
Co-authored papers 22
Sarel J Fleishman
Co-authored papers 20
Ivan Anishchenko
University of Washington
Co-authored papers 18
Richard Bonneau
Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation
Co-authored papers 18
David Veesler
Co-authored papers 16
Oliver F Lange
Center for Integrated Protein Science, Technische Universitat Munchen
Co-authored papers 15
Dylan Chivian
Lawrence Berkeley National Laboratory
Co-authored papers 15
Rhiju Das
Stanford University School of Medicine
Co-authored papers 15
Ora Schueler-Furman
Co-authored papers 14
Minkyung Baek
Seoul National University
Co-authored papers 14
Eva-Maria Strauch
Co-authored papers 13
Jens Meiler
Vanderbilt University
Co-authored papers 13
Sagar D Khare
The State University of New Jersey
Co-authored papers 13
David H O'Connor
Co-authored papers 12
Vicki H Wysocki
The Ohio State University College of Medicine
Co-authored papers 11
Rong Xiao
School of Public Health, Capital Medical University
Co-authored papers 10
Jeffrey J Gray
Johns Hopkins University
Co-authored papers 10
Ingo Ruczinski
Co-authored papers 10
David A Agard
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 9
Eric J Alm
Massachusetts Institute of Technology 21 Ames St. Cambridge
Co-authored papers 8
John F Hunt
Columbia University
Co-authored papers 8
Justin M Kollman
University of Washington
Co-authored papers 8
Rocco Moretti
Co-authored papers 8
Jacob E Corn
Co-authored papers 7
Release 1.2