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Author Details

Max Kotlyar
Schroeder Arthritis Institute
2002
51
22
PMIDPaper TitleJournal TitlePublished Year
37994706PathDIP 5: improving coverage and making enrichment analysis more biologically meaningful.Nucleic Acids Res2024
36453996MirDIP 5.2: tissue context annotation and novel microRNA curation.Nucleic Acids Res2023
37527019USNAP: fast unique dense region detection and its application to lung cancer.Bioinformatics2023
37894979Identifying Serum Metabolomic Markers Associated with Skin Disease Activity in Patients with Psoriatic Arthritis.Int J Mol Sci2023
34755877IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis.Nucleic Acids Res2022
36474475Osteoarthritis Data Integration Portal (OsteoDIP): A web-based gene and non-coding RNA expression database.Osteoarthr Cartil Open2022
36388990B cell linker protein (BLNK) is a regulator of Met receptor signaling and trafficking in non-small cell lung cancer.iScience2022
35156780CFTR interactome mapping using the mammalian membrane two-hybrid high-throughput screening system.Mol Syst Biol2022
34902122Improving Analysis and Annotation of Microarray Data with Protein Interactions.Methods Mol Biol2022
33347923Zinc finger protein-440 promotes cartilage degenerative mechanisms in human facet and knee osteoarthritis chondrocytes.Osteoarthritis Cartilage2021
33863738Association between the renin-angiotensin system and chronic lung allograft dysfunction.Eur Respir J2021
33584989Integrative analysis of layers of data in hepatocellular carcinoma reveals pathway dependencies.World J Hepatol2021
34881186Estrogen Receptor 1 Inhibition of Wnt/β-Catenin Signaling Contributes to Sex Differences in Hepatocarcinogenesis.Front Oncol2021
34557585Increased Autoantibodies Against Ro/SS-A, CENP-B, and La/SS-B in Patients With Kidney Allograft Antibody-mediated Rejection.Transplant Direct2021
34606829Mapping the Phospho-dependent ALK Interactome to Identify Novel Components in ALK Signaling.J Mol Biol2021
34196309Ubiquitin ligase RNF8 suppresses Notch signaling to regulate mammary development and tumorigenesis.J Clin Invest2021
33440149Mechanical Stiffness Controls Dendritic Cell Metabolism and Function.Cell Rep2021
31583635Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID).Methods Mol Biol2020
31733064pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species.Nucleic Acids Res2020
31980649Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRAS<sup>G13D</sup>.Nat Commun2020
33206959The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions.Database (Oxford)2020
33262342Towards a unified open access dataset of molecular interactions.Nat Commun2020
32900843Extracellular Matrix Injury of Kidney Allografts in Antibody-Mediated Rejection: A Proteomics Study.J Am Soc Nephrol2020
32587962The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions.bioRxiv2020
32415080Split Intein-Mediated Protein Ligation for detecting protein-protein interactions and their inhibition.Nat Commun2020
32357304Physiological Tau Interactome in Brain and Its Link to Tauopathies.J Proteome Res2020
30407591IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species.Nucleic Acids Res2019
28684340Modeling tumor progression via the comparison of stage-specific graphs.Methods2018
30222135Ubiquitin ligase RNF8 suppresses Notch signaling to regulate mammary development and tumorigenesis.J Clin Invest2018
27956147Systematic Identification of Oncogenic EGFR Interaction Partners.J Mol Biol2017
28298427Systematic protein-protein interaction mapping for clinically relevant human GPCRs.Mol Syst Biol2017
29220074Prediction of Protein-Protein Interactions.Curr Protoc Bioinformatics2017
28530244Retraction: Circulating plant miRNAs can regulate human gene expression in vitro.Sci Rep2017
28065597A Global Analysis of the Receptor Tyrosine Kinase-Protein Phosphatase Interactome.Mol Cell2017
27267444MYC interaction with the tumor suppressive SWI/SNF complex member INI1 regulates transcription and cellular transformation.Cell Cycle2016
26516188Integrated interactions database: tissue-specific view of the human and model organism interactomes.Nucleic Acids Res2016
26526989Uninterrupted Sedentary Behavior Downregulates BRCA1 Gene Expression.Cancer Prev Res (Phila)2016
27604570Circulating plant miRNAs can regulate human gene expression in vitro.Sci Rep2016
27534398Reduced BRCA1 transcript levels in freshly isolated blood leukocytes from BRCA1 mutation carriers is mutation specific.Breast Cancer Res2016
25402006In silico prediction of physical protein interactions and characterization of interactome orphans.Nat Methods2015
26681426Fundamentals of protein interaction network mapping.Mol Syst Biol2015
25786242Prioritizing therapeutics for lung cancer: an integrative meta-analysis of cancer gene signatures and chemogenomic data.PLoS Comput Biol2015
24491561Integration, visualization and analysis of human interactome.Biochem Biophys Res Commun2014
24561123CHIP-MYTH: a novel interactive proteomics method for the assessment of agonist-dependent interactions of the human β⿿-adrenergic receptor.Biochem Biophys Res Commun2014
24658140The mammalian-membrane two-hybrid assay (MaMTH) for probing membrane-protein interactions in human cells.Nat Methods2014
23203867NetwoRx: connecting drugs to networks and phenotypes in Saccharomyces cerevisiae.Nucleic Acids Res2013
22533420In silico drug screen in mouse liver identifies candidate calorie restriction mimetics.Rejuvenation Res2012
22749929Network-based characterization of drug-regulated genes, drug targets, and toxicity.Methods2012
20128910Inferring the functions of longevity genes with modular subnetwork biomarkers of Caenorhabditis elegans aging.Genome Biol2010
19536202Comparative systems biology of human and mouse as a tool to guide the modeling of human placental pathology.Mol Syst Biol2009
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Collaborators

Igor Jurisica
Schroeder Arthritis Institute
Co-authored papers 48
Igor Stagljar
University of Toronto, Canada Mediterranean Institute for Life Sciences
Co-authored papers 12
Brian Raught
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 3
Mohan Babu
University of Regina
Co-authored papers 3
Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Pablo Porras
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Noemi Del-Toro
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Sylvie Ricard-Blum
ICBMS UMR CNRS 5246, University Lyon 1
Co-authored papers 3
Luana Licata
University of Tor Vergata
Co-authored papers 3
Simona Panni
Universita della Calabria
Co-authored papers 3
Margaret Duesbury
Co-authored papers 3
Livia Perfetto
Department of Biology and Biotechnologies "Charles Darwin", La Sapienza University
Co-authored papers 3
Andrea Jurisicova
Lunenfeld-Tanenbaum Research Institute
Co-authored papers 3
Gianni Cesareni
University of Rome 'Tor Vergata'
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David Otasek
University of California San Diego
Co-authored papers 2
Rama Khokha
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 2
Anne Hakem
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 2
Hiroyuki Aoki
University of Regina
Co-authored papers 2
Hartland W Jackson
Lunenfeld-Tanenbaum Research Institute
Co-authored papers 2
Parasvi S Patel
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 2
Ming-Sound Tsao
University Health Network, University of Toronto
Co-authored papers 2
Otto Sanchez
Ontario Tech University
Co-authored papers 2
Rohan John
University of Toronto
Co-authored papers 2
David J Lynn
South Australian Health and Medical Research Institute
Co-authored papers 2
Razqallah Hakem
Princess Margaret Cancer Centre, University Health Network, University of Toronto
Co-authored papers 2
Matteo Pellegrini
Co-authored papers 2
Sandra Orchard
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Andrzej Chruscinski
University Health Network
Co-authored papers 2
Lukasz Salwinski
university of california los angeles
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