Skip to Main Content

Author Details

Aidong Zhang (CM4AI)
University of Virginia
0000-0001-9723-3246
1987
592
60
Standards, general Machine Learning
PMIDPaper TitleJournal TitlePublished Year
36864611Interpretable meta-learning of multi-omics data for survival analysis and pathway enrichment.Bioinformatics2023
37540223ProtoCell4P: an explainable prototype-based neural network for patient classification using single-cell RNA-seq.Bioinformatics2023
34554186Continual knowledge infusion into pre-trained biomedical language models.Bioinformatics2022
35812120Rich-Club Analysis of Structural Brain Network Alterations in HIV Positive Patients With Fully Suppressed Plasma Viral Loads.Front Neurol2022
33886478Inferring Effective Connectivity Networks From fMRI Time Series With a Temporal Entropy-Score.IEEE Trans Neural Netw Learn Syst2022
33532833Continual representation learning for evolving biomedical bipartite networks.Bioinformatics2021
31603829Learning Brain Effective Connectivity Network Structure Using Ant Colony Optimization Combining With Voxel Activation Information.IEEE J Biomed Health Inform2020
30624207A Multi-View Deep Learning Framework for EEG Seizure Detection.IEEE J Biomed Health Inform2019
31787093A hybrid self-attention deep learning framework for multivariate sleep stage classification.BMC Bioinformatics2019
31920476ACOEC-FD: Ant Colony Optimization for Learning Brain Effective Connectivity Networks From Functional MRI and Diffusion Tensor Imaging.Front Neurosci2019
31856727Integrate multi-omics data with biological interaction networks using Multi-view Factorization AutoEncoder (MAE).BMC Genomics2019
30857950A survey on literature based discovery approaches in biomedical domain.J Biomed Inform2019
30851089MeSHProbeNet: a self-attentive probe net for MeSH indexing.Bioinformatics2019
29293920Towards self-learning based hypotheses generation in biomedical text domain.Bioinformatics2018
29807109Affinity network fusion and semi-supervised learning for cancer patient clustering.Methods2018
29994534Deep Patient Similarity Learning for Personalized Healthcare.IEEE Trans Nanobioscience2018
29854237A Multi-Task Framework for Monitoring Health Conditions via Attention-based Recurrent Neural Networks.AMIA Annu Symp Proc2018
30463546A multi-context learning approach for EEG epileptic seizure detection.BMC Syst Biol2018
26930689Omics Informatics: From Scattered Individual Software Tools to Integrated Workflow Management Systems.IEEE/ACM Trans Comput Biol Bioinform2017
29297344iOPTICS-GSO for identifying protein complexes from dynamic PPI networks.BMC Med Genomics2017
28529066Reconstructing context-specific gene regulatory network and identifying modules and network rewiring through data integration.Methods2017
26540721On the Analysis of Diseases and Their Related Geographical Data.IEEE J Biomed Health Inform2017
27045295Learning Effective Connectivity Network Structure from fMRI Data Based on Artificial Immune Algorithm.PLoS One2016
26394434Detecting Functional Modules Based on a Multiple-Grain Model in Large-Scale Protein-Protein Interaction Networks.IEEE/ACM Trans Comput Biol Bioinform2016
27459962Detecting epileptic seizures with electroencephalogram via a context-learning model.BMC Med Inform Decis Mak2016
26547971A graph-based integrative method of detecting consistent protein functional modules from multiple data sources.Int J Data Min Bioinform2015
26333266ACC-FMD: ant colony clustering for functional module detection in protein-protein interaction networks.Int J Data Min Bioinform2015
26357089Identifying Affinity Classes of Inorganic Materials Binding Sequences via a Graph-Based Model.IEEE/ACM Trans Comput Biol Bioinform2015
26357080Prediction and Informative Risk Factor Selection of Bone Diseases.IEEE/ACM Trans Comput Biol Bioinform2015
26497493Dynamic tracking of functional gene modules in treated juvenile idiopathic arthritis.Genome Med2015
24671611A network modeling approach for the spatial distribution and structure of bone mineral content.AAPS J2014
25265982MAE-FMD: multi-agent evolutionary method for functional module detection in protein-protein interaction networks.BMC Bioinformatics2014
25331593A generative model of identifying informative proteins from dynamic PPI networks.Sci China Life Sci2014
24979059Identifying informative risk factors and predicting bone disease progression via deep belief networks.Methods2014
24800204msiDBN: a method of identifying critical proteins in dynamic PPI networks.Biomed Res Int2014
23229795Clustering and overlapping modules detection in PPI network based on IBFO.Proteomics2013
23871682Privacy-preserving Kruskal-Wallis test.Comput Methods Programs Biomed2013
24010264BoneNET: a network model of bone microstructure and dynamics.Int J Data Min Bioinform2013
23423149SYMPHONY, an information-theoretic method for gene-gene and gene-environment interaction analysis of disease syndromes.Heredity (Edinb)2013
22479818Clustering PPI data based on improved functional-flow model through quantum-behaved PSO.Int J Data Min Bioinform2012
21427755Modeling of environmental and genetic interactions with AMBROSIA, an information-theoretic model synthesis method.Heredity (Edinb)2011
22165896Protein complex detection with semi-supervised learning in protein interaction networks.Proteome Sci2011
19726271Predicting protein function by frequent functional association pattern mining in protein interaction networks.IEEE Trans Inf Technol Biomed2010
20815886Comparison of information-theoretic to statistical methods for gene-gene interactions in the presence of genetic heterogeneity.BMC Genomics2010
20696080Multi-agent modeling of the South Korean avian influenza epidemic.BMC Infect Dis2010
20438650Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins.BMC Bioinformatics2010
19293841The interaction index, a novel information-theoretic metric for prioritizing interacting genetic variations and environmental factors.Eur J Hum Genet2009
19889230Information-theoretic gene-gene and gene-environment interaction analysis of quantitative traits.BMC Genomics2009
20018067A two-stage search strategy for detecting multiple loci associated with rheumatoid arthritis.BMC Proc2009
19623774Semantic similarity based feature extraction from microarray expression data.Int J Data Min Bioinform2009
  • 1 - 50 of 67

Recommended Authors

Marinka Zitnik
Harvard Medical School
Career Start Year 2013
Number of shared co-authors 0
Hua Xu
The University of Texas Health Science Center at Houston
Career Start Year 2012
Number of shared co-authors 0
Xiang Zhang
Harvard Medical School
Career Start Year 2008
Number of shared co-authors 0
Yuanfang Guan
University of Michigan ann arbor
Career Start Year 2007
Number of shared co-authors 1
Xin Gao
King Abdullah University of Science and Technology (KAUST)
Career Start Year 2007
Number of shared co-authors 1
Hyunju Lee
Gwangju Institute of Science and Technology
Career Start Year 2006
Number of shared co-authors 0
Xiuzhen Huang
Cedars-Sinai Medical Center.
Career Start Year 2006
Number of shared co-authors 0
Jaewoo Kang
Korea University
Career Start Year 2006
Number of shared co-authors 0
Ying Liu
Carleton University.
Career Start Year 2006
Number of shared co-authors 0
Dongxiao Zhu
Wayne State University
Career Start Year 2005
Number of shared co-authors 0
Alberto Paccanaro
University of London
Career Start Year 2005
Number of shared co-authors 0
Wenjin Jim Zheng
University of Texas Health Science Center at Houston
Career Start Year 2004
Number of shared co-authors 0
Doheon Lee
Korea Advanced Institute of Science and Technology
Career Start Year 2004
Number of shared co-authors 1
Mario Cannataro
Data Analytics Research Center, University Magna Graecia of Catanzaro
Career Start Year 2004
Number of shared co-authors 3
Yen-Jen Oyang
Graduate Institute of Networking and Multimedia, National Taiwan University
Career Start Year 2004
Number of shared co-authors 0
Hwanjo Yu
Pohang University of Science and Technology
Career Start Year 2003
Number of shared co-authors 0
Jake Y. Chen (CM4AI)
University of Alabama at Birmingham
Career Start Year 2003
Number of shared co-authors 0
Bairong Shen
Institute for Systems Genetics, Western China Hospital, Sichuan University
Career Start Year 2003
Number of shared co-authors 0
Gil Alterovitz
Brigham and Women's Hospital
Career Start Year 2002
Number of shared co-authors 0
Alioune Ngom
University of Windsor
Career Start Year 2001
Number of shared co-authors 1
Chun-Nan Hsu
University of California, C.N.H.) and Veterans Affairs San Diego Healthcare System
Career Start Year 2001
Number of shared co-authors 0
Wei Wang
IBM Thomas J Watson Research Center, University of California Los Angeles, University of North Carolina at Chapel Hill
Career Start Year 1999
Number of shared co-authors 0
Zoran Obradovic
Center for Data Analytics and Biomedical Informatics, Temple University
Career Start Year 1998
Number of shared co-authors 0
Blaz Zupan
University of Ljubljana
Career Start Year 1998
Number of shared co-authors 0
Jung-Hsien Chiang
National Cheng Kung University
Career Start Year 1997
Number of shared co-authors 0
Samuel Kaski
Aalto University
Career Start Year 1995
Number of shared co-authors 0
Giorgio Valentini
Universita degli Studi di Milano
Career Start Year 1995
Number of shared co-authors 0
Hiroshi Mamitsuka
Institute for Chemical Research, Kyoto University
Career Start Year 1994
Number of shared co-authors 0
Byoung-Tak Zhang
Seoul National University
Career Start Year 1994
Number of shared co-authors 0
Seiya Imoto
Human Genome Center, The Institute of Medical Science, The University of Tokyo
Career Start Year 1978
Number of shared co-authors 0

Collaborators

Murali Ramanathan
Department of Pharmaceutical Sciences, State University of New York
Co-authored papers 25
Guangxu Xun
University of Virginia
Co-authored papers 8
Pritam Chanda
Indiana University-Purdue University
Co-authored papers 8
Junzhong Ji
Beijing Institute of Artificial Intelligence, Beijing University of Technology
Co-authored papers 7
Young-Rae Cho
Yonsei University Mirae Campus
Co-authored papers 7
Kebin Jia
Beijing University of Technology
Co-authored papers 6
Lara E Sucheston-Campbell
The Ohio State University
Co-authored papers 6
Li Zhang
State University of New York at Buffalo
Co-authored papers 5
Kishlay Jha
University of Virginia
Co-authored papers 5
Woochang Hwang
College of Medicine, Hanyang University
Co-authored papers 5
Ye Yuan
Beijing University of Technology
Co-authored papers 5
Xiujuan Lei
Shaanxi Normal University
Co-authored papers 4
Tianle Ma
Zhongshan Hospital Fudan University
Co-authored papers 4
Nan Du
Institute for Solid State Physics, Friedrich Schiller University Jena
Co-authored papers 4
Daniel A Brazeau
Marshall University, Joan C. Edwards School of Medicine
Co-authored papers 4
Fenglong Ma
College of Information Sciences and Technology, Pennsylvania State University
Co-authored papers 3
Jinduo Liu
First Affiliated Hospital, China Medical University
Co-authored papers 3
Pengjun Pei
State University of New York at Buffalo
Co-authored papers 3
Hui Li
State University of New York
Co-authored papers 3
Lei Shi
State University of New York at Buffalo
Co-authored papers 3
Yuan Zhang
Beijing University of Technology
Co-authored papers 3
Kavitha Bhasi
Department of Pharmaceutical Sciences, Eastern Michigan University
Co-authored papers 3
Jing Gao
University at Buffalo
Co-authored papers 2
Qiuling Suo
University at Buffalo
Co-authored papers 2
Pierangelo Veltri
University of Calabria
Co-authored papers 2
Jia Wei Lv
Co-authored papers 2
Yue Cheng
Co-authored papers 2
Lawrence B Bone
University of Buffalo
Co-authored papers 2
Stefan Bekiranov
University of Virginia
Co-authored papers 2
Li Ge
Fujian University of Traditional Chinese Medicine
Co-authored papers 2
Release 1.2