Author details

Full Name

John Aach

Affiliation

Harvard Medical School

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

Prashant Mali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36258039	How collaboration between bioethicists and neuroscientists can advance research.	Nat Neurosci	2022
33462496	Characterizing the portability of phage-encoded homologous recombination proteins.	Nat Chem Biol	2021
33693773	Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses.	Nucleic Acids Res	2021
33288905	Chromosome-scale, haplotype-resolved assembly of human genomes.	Nat Biotechnol	2021
31860070	A haplotype-aware de novo assembly of related individuals using pedigree sequence graph.	Bioinformatics	2020
28545477	Optimizing complex phenotypes through model-guided multiplex genome engineering.	Genome Biol	2017
28494857	Correction: Addressing the ethical issues raised by synthetic human entities with embryo-like features.	Elife	2017
28494856	Addressing the ethical issues raised by synthetic human entities with embryo-like features.	Elife	2017
28991237	Corrigendum: Engineering and optimising deaminase fusions for genome editing.	Nat Commun	2017
27804970	Engineering and optimising deaminase fusions for genome editing.	Nat Commun	2016
25414332	Multi-kilobase homozygous targeted gene replacement in human induced pluripotent stem cells.	Nucleic Acids Res	2015
26456528	Genome-wide inactivation of porcine endogenous retroviruses (PERVs).	Science	2015
25675209	Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues.	Nat Protoc	2015
25730490	Highly efficient Cas9-mediated transcriptional programming.	Nat Methods	2015
24452804	Rational optimization of tolC as a powerful dual selectable marker for genome engineering.	Nucleic Acids Res	2014
25425480	Targeted and genome-wide sequencing reveal single nucleotide variations impacting specificity of Cas9 in human stem cells.	Nat Commun	2014
25252978	Multiplex single-molecule interaction profiling of DNA-barcoded proteins.	Nature	2014
25180701	Improved cell-free RNA and protein synthesis system.	PLoS One	2014
24578530	Highly multiplexed subcellular RNA sequencing in situ.	Science	2014
23287722	RNA-guided human genome engineering via Cas9.	Science	2013
23907390	Optimization of scarless human stem cell genome editing.	Nucleic Acids Res	2013
23907171	CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering.	Nat Biotechnol	2013
23929339	Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9.	Nat Biotechnol	2013
24028704	On the design of clone-based haplotyping.	Genome Biol	2013
23460208	Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems.	Nucleic Acids Res	2013
23503053	Barcoding cells using cell-surface programmable DNA-binding domains.	Nat Methods	2013
22797899	A public resource facilitating clinical use of genomes.	Proc Natl Acad Sci U S A	2012
21245846	Proteome-wide systems analysis of a cellulosic biofuel-producing microbe.	Mol Syst Biol	2011
20373666	Personal genomes in progress: from the human genome project to the personal genome project.	Dialogues Clin Neurosci	2010
19478186	Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing.	Science	2009
19620972	Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human.	Nat Methods	2009
19525355	Multiplex padlock targeted sequencing reveals human hypermutable CpG variations.	Genome Res	2009
18260140	Identification of molecular markers of bipolar cells in the murine retina.	J Comp Neurol	2008
17588932	Quantitative morphological signatures define local signaling networks regulating cell morphology.	Science	2007
16493423	Long-range polony haplotyping of individual human chromosome molecules.	Nat Genet	2006
17016519	Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability.	Mol Syst Biol	2006
15938023	Accommodation or prediction?	Science	2005
15064081	Mathematical models of diffusion-constrained polymerase chain reactions: basis of high-throughput nucleic acid assays and simple self-organizing systems.	J Theor Biol	2004
12769849	Computational and experimental identification of C. elegans microRNAs.	Mol Cell	2003
12032321	Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range.	Proc Natl Acad Sci U S A	2002
12413400	Automated modelling of signal transduction networks.	BMC Bioinformatics	2002
11395426	Aligning gene expression time series with time warping algorithms.	Bioinformatics	2001
11237010	Computational comparison of two draft sequences of the human genome.	Nature	2001
11726920	Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.	Nat Genet	2001
10779484	Systematic management and analysis of yeast gene expression data.	Genome Res	2000

1 - 45 of 45

George M Church

Harvard Medical School

Career Start Year 2018

Number of shared co-authors 4

Nozomu Yachie

The University of British Columbia

Career Start Year 2006

Number of shared co-authors 3

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 2

Brian Teague

Massachusetts Institute of Technology

Career Start Year 2005

Number of shared co-authors 1

Robert Sebra

Icahn School of Medicine at Mount Sinai

Career Start Year 2004

Number of shared co-authors 3

Eran Segal

Weizmann Institute of Science

Career Start Year 2001

Number of shared co-authors 4

Tarjei S Mikkelsen

Harvard University, USA Broad Institute, USA Harvard Stem Cell Institute

Career Start Year 2001

Number of shared co-authors 4

Shawn Levy

HudsonAlpha Institute for Biotechnology

Career Start Year 1999

Number of shared co-authors 7

Lars M Steinmetz

Stanford University

Career Start Year 1998

Number of shared co-authors 4

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 0

Sarah J Wheelan

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1998

Number of shared co-authors 0

Sarah A Teichmann

Wellcome Sanger Institute

Career Start Year 1996

Number of shared co-authors 9

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 6

Jared C Roach

Institute for Systems Biology

Career Start Year 1995

Number of shared co-authors 4

Steven J M Jones

University of British Columbia

Career Start Year 1995

Number of shared co-authors 5

Stephen R Quake

Stanford University

Career Start Year 1994

Number of shared co-authors 4

Sheng Zhong

Peking-Tsinghua Center for Life Sciences, College of Life Sciences, Peking University

Career Start Year 1994

Number of shared co-authors 1

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 4

Ewan Birney

European Bioinformatics Institute

Career Start Year 1992

Number of shared co-authors 9

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 10

Aleksandar Milosavljevic

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 4

Sofie R Salama

Genomics Institute, University of California Santa Cruz

Career Start Year 1990

Number of shared co-authors 5

Michael B Eisen

Howard Hughes Medical Institute, University of California Berkeley

Career Start Year 1988

Number of shared co-authors 1

Richard A Gibbs

Baylor College of Medicine

Career Start Year 1987

Number of shared co-authors 14

Aviv Regev

Broad Institute of MIT and Harvard

Career Start Year 1987

Number of shared co-authors 15

Eric S Lander

Vanderbilt-Ingram Cancer Center, Vanderbilt University

Career Start Year 1986

Number of shared co-authors 16

Andreas Gnirke

The Center for Genome Architecture, Baylor College of Medicine

Career Start Year 1986

Number of shared co-authors 2

Michael Snyder

Stanford University

Career Start Year 1981

Number of shared co-authors 10

Itai Yanai

Institute for Systems Genetics NYU Grossman School of Medicine

Career Start Year 1977

Number of shared co-authors 0

John S Mattick

Australia UNSW RNA Institute

Career Start Year 1951

Number of shared co-authors 2

row(s) 1 - 30 of 30

George M Church

Harvard Medical School

Co-authored papers 41

Prashant Mali (CM4AI)

University of California San Diego

Co-authored papers 9

Luhan Yang

College of Resources and Environment, Southwest University

Co-authored papers 8

Kun Zhang

China Pharmaceutical University

Co-authored papers 7

Je-Hyuk Lee

Department of Food and Nutrition, Kongju National University

Co-authored papers 6

Jeantine E Lunshof

Wyss Institute for Biologically Inspired Engineering, Harvard University

Co-authored papers 5

Marc G??ell

Universitat Pompeu Fabra

Co-authored papers 5

Joyce L Yang

Beth Israel Deaconess Medical Center and Harvard Medical School

Co-authored papers 4

Jin Billy Li

Co-authored papers 4

Xavier Rios

Texas Children's Hospital, Baylor College of Medicine

Co-authored papers 4

Daniel B Goodman

University of California San Francisco

Co-authored papers 4

Susan Byrne

Royal College of Surgeons in Ireland

Co-authored papers 3

Jonathan Scheiman

Harvard Medical School

Co-authored papers 3

Bin Xie

Co-authored papers 3

Emal Lesha

University of Tennessee Health Science Center

Co-authored papers 3

Adrian W Briggs

Harvard University

Co-authored papers 3

Emily M LeProust

Co-authored papers 3

Yuan Gao

Johns Hopkins University

Co-authored papers 3

Thomas C Ferrante

Wyss Institute for Biologically Inspired Engineering, Harvard University

Co-authored papers 3

Julie E Norville

Harvard Medical School

Co-authored papers 3

Feng Zhang

Massachusetts Institute of Technology, USA Broad Institute

Co-authored papers 2

Norbert Perrimon

Co-authored papers 2

Kimberly Robasky

Renaissance Computing Institute, University of North Carolina at Chapel Hill

Co-authored papers 2

Jason Bobe

Co-authored papers 2

Venky Soundararajan

inc. 2424 Erwin Road

Co-authored papers 2

Wei Leong Chew

Genome Institute of Singapore

Co-authored papers 2

Chao Li

Wyss Institute for Biologically Inspired Engineering, Harvard University

Co-authored papers 2

David B T Cox

Broad Institute of MIT and Harvard

Co-authored papers 2

Christine E Seidman

Brigham and Women's Hospital (Y.K.

Co-authored papers 2

Evan R Daugharthy

Harvard Medical School

Co-authored papers 2

1 - 30

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