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Author Details

Michael E Pfrender
University of Notre Dame
1995
89
33
PMIDPaper TitleJournal TitlePublished Year
36799015Environment and shipping drive environmental DNA beta-diversity among commercial ports.Mol Ecol2023
37863047Evolutionary Insights from a Large-Scale Survey of Population-Genomic Variation.Mol Biol Evol2023
37946625Evolutionary Genomics of Sister Species Differing in Effective Population Sizes and Recombination Rates.Genome Biol Evol2023
37205430Evolutionary Insights from a Large-scale Survey of Population-genomic Variation.bioRxiv2023
37162919The Genome-wide Signature of Short-term Temporal Selection.bioRxiv2023
35113163SARS-CoV-2 Variant Tracking and Mitigation During In-Person Learning at a Midwestern University in the 2020-2021 School Year.JAMA Netw Open2022
35596742The road not taken: Evolution of tetrodotoxin resistance in the Sierra garter snake (Thamnophis couchii) by a path less travelled.Mol Ecol2022
35848117Symptomatic, Presymptomatic, and Asymptomatic Transmission of SARS-CoV-2 in a University Student Population, August-November 2020.Public Health Rep2022
36114500Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics.BMC Med Genomics2022
35044220Performance of Three Tests for SARS-CoV-2 on a University Campus Estimated Jointly with Bayesian Latent Class Modeling.Microbiol Spectr2022
34726699Genome-Wide Allele-Specific Expression in Obligately Asexual Daphnia pulex and the Implications for the Genetic Basis of Asexuality.Genome Biol Evol2021
34646254A Seed-Endophytic <i>Bacillus safensis</i> Strain With Antimicrobial Activity Has Genes for Novel Bacteriocin-Like Antimicrobial Peptides.Front Microbiol2021
32198924The geographic mosaic in parallel: Matching patterns of newt tetrodotoxin levels and snake resistance in multiple predator-prey pairs.J Anim Ecol2020
31969194Gene content evolution in the arthropods.Genome Biol2020
31906859A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex.BMC Genomics2020
32847507The roles of vicariance and isolation by distance in shaping biotic diversification across an ancient archipelago: evidence from a Seychelles caecilian amphibian.BMC Evol Biol2020
32178466Uncovering Effects from the Structure of Metabarcode Sequences for Metagenetic and Microbiome Analysis.Methods Protoc2020
31506352Global invasion history of the agricultural pest butterfly <i>Pieris rapae</i> revealed with genomics and citizen science.Proc Natl Acad Sci U S A2019
31664048Author Correction: Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys.Sci Rep2019
28746735Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes.Mol Ecol2018
29891968Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys.Sci Rep2018
30060190Pattern of DNA Methylation in Daphnia: Evolutionary Perspective.Genome Biol Evol2018
30060036Molecular Adaptations for Sensing and Securing Prey and Insight into Amniote Genome Diversity from the Garter Snake Genome.Genome Biol Evol2018
29463695Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling.Proc Natl Acad Sci U S A2018
29211465Gene Coexpression Networks Drive and Predict Reproductive Effects in Daphnia in Response to Environmental Disturbances.Environ Sci Technol2018
29255013Evolutionary transition from blood feeding to obligate nonbiting in a mosquito.Proc Natl Acad Sci U S A2018
27983812Bisulfite Sequencing with Daphnia Highlights a Role for Epigenetics in Regulating Stress Response to Microcystis through Preferential Differential Methylation of Serine and Threonine Amino Acids.Environ Sci Technol2017
28140384Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.Sci Data2017
28235826A New Reference Genome Assembly for the Microcrustacean <i>Daphnia pulex</i>.G3 (Bethesda)2017
29281964The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera.BMC Evol Biol2017
29116665Reproductive isolation and environmental adaptation shape the phylogeography of mountain pine beetle (Dendroctonus ponderosae).Mol Ecol2017
28727195Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient.Mol Ecol2017
28921802Environmental DNA metabarcoding: Transforming how we survey animal and plant communities.Mol Ecol2017
28792493Is there more than one way to skin a newt? Convergent toxin resistance in snakes is not due to a common genetic mechanism.Heredity (Edinb)2017
26032773Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding.Mol Ecol Resour2016
26374236Is there more than one way to skin a newt? Convergent toxin resistance in snakes is not due to a common genetic mechanism.Heredity (Edinb)2016
27862502Temporal genetic stability in natural populations of the waterflea Daphnia magna in response to strong selection pressure.Mol Ecol2016
27538446Genome-wide profiling of 24 hr diel rhythmicity in the water flea, Daphnia pulex: network analysis reveals rhythmic gene expression and enhances functional gene annotation.BMC Genomics2016
27114280Genomic Appraisal of the Multifactorial Basis for In Vitro Acquisition of Miltefosine Resistance in Leishmania donovani.Antimicrob Agents Chemother2016
27291053Historical Contingency in a Multigene Family Facilitates Adaptive Evolution of Toxin Resistance.Curr Biol2016
27164179Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.Sci Data2016
27516876Estimating species richness using environmental DNA.Ecol Evol2016
27017526Gene Body Methylation Patterns in Daphnia Are Associated with Gene Family Size.Genome Biol Evol2016
25754071Conserved transcriptional responses to cyanobacterial stressors are mediated by alternate regulation of paralogous genes in Daphnia.Mol Ecol2015
25874676A molecular mechanism of artemisinin resistance in Plasmodium falciparum malaria.Nature2015
25135948Parallel evolution of tetrodotoxin resistance in three voltage-gated sodium channel genes in the garter snake Thamnophis sirtalis.Mol Biol Evol2014
25431334An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits.BMC Genomics2014
25282344Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia.BMC Genomics2014
24963791Confirmation and distribution of tetrodotoxin for the first time in terrestrial invertebrates: two terrestrial flatworm species (Bipalium adventitium and Bipalium kewense).PLoS One2014
23395434The evolutionary time machine: using dormant propagules to forecast how populations can adapt to changing environments.Trends Ecol Evol2013
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Collaborators

John K Colbourne
University of Birmingham
Co-authored papers 16
Jacqueline A Lopez
University of Notre Dame
Co-authored papers 7
Don Gilbert
Indiana University
Co-authored papers 5
James B Brown
Co-authored papers 5
William Kelley Thomas
Co-authored papers 4
Douglas B Rusch
Center for Genomics and Bioinformatics, Indiana University
Co-authored papers 3
Jessica J Hellmann
Institute On the Environment, University of Minnesota
Co-authored papers 3
Scott J Emrich
The Pennsylvania State University College of Medicine
Co-authored papers 3
Sean F Ryan
Exponent Inc.
Co-authored papers 3
Xiaoqian Jiang
Carnegie Mellon University, The University of Texas Health Science Center at Houston, University of California San Diego
Co-authored papers 2
Oliver Niehuis
Institute of Biology I (Zoology), Albert Ludwig University
Co-authored papers 2
Wesley C Warren
Institute of Informatics and Data Sciences, University of Missouri
Co-authored papers 2
Evgeny M Zdobnov
University of Geneva Medical School
Co-authored papers 2
Jon Mark Scriber
Michigan State University
Co-authored papers 2
Jeong-Hyeon Choi
National Marine Biodiversity Institute of Korea
Co-authored papers 2
Erliang Zeng
College of Dentistry, University of Iowa
Co-authored papers 2
Asaf Salamov
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 1
Harshavardhan Doddapaneni
Baylor College of Medicine
Co-authored papers 1
Jeanne Romero-Severson
University of Notre Dame
Co-authored papers 1
Joy Jayaseelan
Baylor College of Medicine
Co-authored papers 1
Takuji Yamada
Tokyo Institute of Technology
Co-authored papers 1
Jeffery P Demuth
University of Texas at Arlington
Co-authored papers 1
Zuojian Tang
Co-authored papers 1
Peer Bork
University of Wurzburg
Co-authored papers 1
John H Werren
University of Rochester
Co-authored papers 1
Alexandre Souvorov
Co-authored papers 1
Kim C Worley
Baylor College of Medicine
Co-authored papers 1
Stacey J Winham
Mayo Clinic
Co-authored papers 1
Andreas Rechtsteiner
University of California
Co-authored papers 1
Michael C Fontaine
University Montpellier, CNRS
Co-authored papers 1
Release 1.2