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Author Details

Mustafa H Syed
Memorial Sloan Kettering Cancer Center
2006
22
11
PMIDPaper TitleJournal TitlePublished Year
36963483Clonal Characterization and Somatic Hypermutation Assessment by Next-Generation Sequencing in Chronic Lymphocytic Leukemia/Small Lymphocytic Lymphoma: A Detailed Description of the Technical Performance, Clinical Utility, and Platform Comparison.J Mol Diagn2023
33177119Evaluation of a Combined Multilocus Sequence Typing and Whole-Genome Sequencing Two-Step Algorithm for Routine Typing of <i>Clostridioides difficile</i>.J Clin Microbiol2021
33171187Genotypic correlation between post discharge Clostridiodes difficle infection (CDI) and previous unit-based contacts.J Hosp Infect2021
33217553Routine Evaluation of Minimal Residual Disease in Myeloma Using Next-Generation Sequencing Clonality Testing: Feasibility, Challenges, and Direct Comparison with High-Sensitivity Flow Cytometry.J Mol Diagn2021
31612754Clonally-Related CD5+ CLL/SLL and CD10+ high grade B-cell lymphoma suggests common neoplastic progenitor with branched disease evolution, with therapeutic implications.Leuk Lymphoma2020
32699232Baseline VDJ clonotype detection using a targeted sequencing NGS assay: allowing for subsequent MRD assessment.Blood Cancer J2020
30590126Establishment of Immunoglobulin Heavy (IGH) Chain Clonality Testing by Next-Generation Sequencing for Routine Characterization of B-Cell and Plasma Cell Neoplasms.J Mol Diagn2019
29979655KBase: The United States Department of Energy Systems Biology Knowledgebase.Nat Biotechnol2018
28003194LacI Transcriptional Regulatory Networks in Clostridium thermocellum DSM1313.Appl Environ Microbiol2017
28481359Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients.Nat Med2017
28777785Erratum: Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients.Nat Med2017
24580106Metabolic environments and genomic features associated with pathogenic and mutualistic interactions between bacteria and plants.Mol Plant Microbe Interact2014
24205326Industrial robustness: understanding the mechanism of tolerance for the Populus hydrolysate-tolerant mutant strain of Clostridium thermocellum.PLoS One2013
24295562Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass.Biotechnol Biofuels2013
22238270BESC knowledgebase public portal.Bioinformatics2012
22701314Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA.Gene Regul Syst Bio2012
20627862Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions.Database (Oxford)2010
20696711CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database.Glycobiology2010
20198195Shewregdb: database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1.Bioinformation2009
17135204Sentra: a database of signal transduction proteins for comparative genome analysis.Nucleic Acids Res2007
17855417Evolutionary analysis of enzymes using Chisel.Bioinformatics2007
16381888PUMA2--grid-based high-throughput analysis of genomes and metabolic pathways.Nucleic Acids Res2006
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Collaborators

Elizabeth M Glass
Argonne National Laboratory
Co-authored papers 3
Miriam Land
Oak Ridge National Laboratory
Co-authored papers 3
Debyani Chakravarty
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Marc Ladanyi
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Howard I Scher
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Ang??lica Ochoa-Avil??s
University of Cuenca
Co-authored papers 2
Luc G T Morris
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Abraham Ari Hakimi
Co-authored papers 2
Nikolaus Schultz
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Benjamin E Gross
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Barry S Taylor
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Hongxin Zhang
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Dawn M Klingeman
Oak Ridge National Laboratory
Co-authored papers 2
Jianjiong Gao
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Wassim Abida
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Niedzica Camacho
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Ritika Kundra
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Michael F Berger
Co-authored papers 2
Zachary J Heins
Boston University
Co-authored papers 2
José Baselga
Co-authored papers 2
Yi Zhang
Co-authored papers 2
Gregory J Riely
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Vivek Kumar
Co-authored papers 1
Benjamin H Allen
Oak Ridge National Laboratory
Co-authored papers 1
Fei He
Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Co-authored papers 1
Marissa Mills
Oak Ridge National Laboratory
Co-authored papers 1
Shinjae Yoo
Brookhaven National Laboratory
Co-authored papers 1
Thomas Brettin
University of Chicago
Co-authored papers 1
Folker Meyer
Institute for Artificial Intelligence, University of Duisburg-Essen
Co-authored papers 1
Dantong Yu
New Jersey Institute of Technology
Co-authored papers 1
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