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Author Details

Jos?? Jes??s Fern??ndez
National Center for Biotechnology, Spanish National Research Council
1996
65
29
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34967475Architecture of torovirus replicative organelles.Mol Microbiol2022
35544963Optical flow driven interpolation for isotropic FIB-SEM reconstructions.Comput Methods Programs Biomed2022
35917713Computational methods for three-dimensional electron microscopy (3DEM).Comput Methods Programs Biomed2022
34327277Electron Tomography to Study the Three-dimensional Structure of the Reovirus Egress Pathway in Mammalian Cells.Bio Protoc2021
34969817Electron cryo-tomography structure of axonemal doublet microtubule from <i>Tetrahymena thermophila</i>.Life Sci Alliance2021
34416376TomoAlign: A novel approach to correcting sample motion and 3D CTF in CryoET.J Struct Biol2021
32221611PolishEM: image enhancement in FIB-SEM.Bioinformatics2020
32356864A modified lysosomal organelle mediates nonlytic egress of reovirus.J Cell Biol2020
30690142Consideration of sample motion in cryo-tomography based on alignment residual interpolation.J Struct Biol2019
30741631Electron cryo-tomography provides insight into procentriole architecture and assembly mechanism.Elife2019
29410148Cryo-tomography tilt-series alignment with consideration of the beam-induced sample motion.J Struct Biol2018
29850773TomoEED: fast edge-enhancing denoising of tomographic volumes.Bioinformatics2018
27026525Three-dimensional imaging of the intracellular assembly of a functional viral RNA replicase complex.J Cell Sci2017
275058903D electron tomography of brain tissue unveils distinct Golgi structures that sequester cytoplasmic contents in neurons.J Cell Sci2017
26769364Site-Specific Cryo-focused Ion Beam Sample Preparation Guided by 3D Correlative Microscopy.Biophys J2016
27606840The Structural Architecture of an Infectious Mammalian Prion Using Electron Cryomicroscopy.PLoS Pathog2016
27458130Novel role for the midbody in primary ciliogenesis by polarized epithelial cells.J Cell Biol2016
26743046Removing Contamination-Induced Reconstruction Artifacts from Cryo-electron Tomograms.Biophys J2016
25599398Ring closure activates yeast γTuRC for species-specific microtubule nucleation.Nat Struct Mol Biol2015
26217710Tuning the cache memory usage in tomographic reconstruction on standard computers with Advanced Vector eXtensions (AVX).Data Brief2015
25626908Correction for Fernández de Castro et al., Reovirus Forms Neo-Organelles for Progeny Particle Assembly within Reorganized Cell Membranes.mBio2015
25820430Distribution of DNA-condensing protein complexes in the adenovirus core.Nucleic Acids Res2015
25528570Tomo3D 2.0--exploitation of advanced vector extensions (AVX) for 3D reconstruction.J Struct Biol2015
24625523Robust membrane detection based on tensor voting for electron tomography.J Struct Biol2014
25242455Autofocused 3D classification of cryoelectron subtomograms.Structure2014
24582712A marker-free automatic alignment method based on scale-invariant features.J Struct Biol2014
24549844Reovirus forms neo-organelles for progeny particle assembly within reorganized cell membranes.mBio2014
23085430A ridge-based framework for segmentation of 3D electron microscopy datasets.J Struct Biol2013
22157822Three-dimensional structure of basal body triplet revealed by electron cryo-tomography.EMBO J2012
23139768Evaluation of a multicore-optimized implementation for tomographic reconstruction.PLoS One2012
22475372Hybrid computing: CPU+GPU co-processing and its application to tomographic reconstruction.Ultramicroscopy2012
22658288Computational methods for electron tomography.Micron2012
21172911Fast tomographic reconstruction on multicore computers.Bioinformatics2011
21616152A differential structure approach to membrane segmentation in electron tomography.J Struct Biol2011
21431563Fast three-dimensional noise reduction for real-time electron tomography.Adv Exp Med Biol2011
19822214Improving the technique of vitreous cryo-sectioning for cryo-electron tomography: electrostatic charging for section attachment and implementation of an anti-contamination glove box.J Struct Biol2010
20802209XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography.Bioinformatics2010
20865517High performance computing approaches for 3D reconstruction of complex biological specimens.Adv Exp Med Biol2010
20655079Three-dimensional structure of Rubella virus factories.Virology2010
20132889A matrix approach to tomographic reconstruction and its implementation on GPUs.J Struct Biol2010
20085820Vectorization with SIMD extensions speeds up reconstruction in electron tomography.J Struct Biol2010
18940260Exploiting desktop supercomputing for three-dimensional electron microscopy reconstructions using ART with blobs.J Struct Biol2009
19616103Cryo-X-ray tomography of vaccinia virus membranes and inner compartments.J Struct Biol2009
19523199TOMOBFLOW: feature-preserving noise filtering for electron tomography.BMC Bioinformatics2009
19076058Membrane remodelling during vaccinia virus morphogenesis.Biol Cell2009
18614378Sharpening high resolution information in single particle electron cryomicroscopy.J Struct Biol2008
18547336The unique architecture of Bunyamwera virus factories around the Golgi complex.Cell Microbiol2008
18675361High performance computing in structural determination by electron cryomicroscopy.J Struct Biol2008
17223536Divergent substrate-binding mechanisms reveal an evolutionary specialization of eukaryotic prefoldin compared to its archaeal counterpart.Structure2007
17872913EGEETomo: a user-friendly, fault-tolerant and grid-enabled application for 3D reconstruction in electron tomography.Bioinformatics2007
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Collaborators

Sam Li
University of California San Francisco
Co-authored papers 9
Jose Maria Carazo
National Centre for Biotechnology (CNB CSIC), Campus Universidad Autonoma de Madrid
Co-authored papers 9
David A Agard
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 6
Vladan Lu??i??
Max-Planck-Institute of Biochemistry
Co-authored papers 3
Wolfgang Baumeister
Max Planck Institute of Biochemistry
Co-authored papers 3
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 1
Kimberly K Fong
University of Washington
Co-authored papers 1
Alasdair C Steven
National Institutes of Health
Co-authored papers 1
Mark Winey
University of California davis
Co-authored papers 1
Javier A Vel??zquez-Muriel
University of California san francisco
Co-authored papers 1
Fa Zhang
University of Chinese Academy of Sciences
Co-authored papers 1
Trisha N Davis
University of Washington
Co-authored papers 1
John V Kilmartin
Medical Research Council Laboratory of Molecular Biology
Co-authored papers 1
Joachim Frank
Columbia University
Co-authored papers 1
Mark H Ellisman
National Center for Microscopy and Imaging Research, University of California
Co-authored papers 1
Xiaohua Wan
Beijing Institute of Technology
Co-authored papers 1
Justin M Kollman
University of Washington
Co-authored papers 1
Charles H Greenberg
University of California San Francisco
Co-authored papers 1
Alex Zelter
University of Washington
Co-authored papers 1
Anthony A Hyman
Max Planck Institute of Molecular Cell Biology and Genetics
Co-authored papers 1
Friedrich F??rster
Utrecht University
Co-authored papers 1
J??rgen M Plitzko
Max Planck Institute of Biochemistry
Co-authored papers 1
Albert Lawrence
National Center for Microscopy and Imaging Research, University of California
Co-authored papers 1
Michelle Moritz
University of California san francisco
Co-authored papers 1
Release 1.2