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Author Details

Ethan Cerami
Dana-Farber Cancer Institute
2006
30
20
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36634297Programmatic Precision Oncology Decision Support for Patients With Gastrointestinal Cancer.JCO Precis Oncol2023
36634297Programmatic Precision Oncology Decision Support for Patients With Gastrointestinal Cancer.JCO Precis Oncol2023
34587068ThreadStates: State-based Visual Analysis of Disease Progression.IEEE Trans Vis Comput Graph2022
36202909MatchMiner: an open-source platform for cancer precision medicine.NPJ Precis Oncol2022
36455195Response to MEK Inhibitor Therapy in <i>MAP2K1</i> (<i>MEK1</i>) K57N Non-Small-Cell Lung Cancer and Genomic Landscape of <i>MAP2K1</i> Mutations in Non-Small-Cell Lung Cancer.JCO Precis Oncol2022
34587068ThreadStates: State-based Visual Analysis of Disease Progression.IEEE Trans Vis Comput Graph2022
36455195Response to MEK Inhibitor Therapy in <i>MAP2K1</i> (<i>MEK1</i>) K57N Non-Small-Cell Lung Cancer and Genomic Landscape of <i>MAP2K1</i> Mutations in Non-Small-Cell Lung Cancer.JCO Precis Oncol2022
36202909MatchMiner: an open-source platform for cancer precision medicine.NPJ Precis Oncol2022
33293374Genomic Characterization of <i>de novo</i> Metastatic Breast Cancer.Clin Cancer Res2021
33625877OncoTree: A Cancer Classification System for Precision Oncology.JCO Clin Cancer Inform2021
34252935OncoThreads: visualization of large-scale longitudinal cancer molecular data.Bioinformatics2021
33293374Genomic Characterization of <i>de novo</i> Metastatic Breast Cancer.Clin Cancer Res2021
33419780Network for Biomarker Immunoprofiling for Cancer Immunotherapy: Cancer Immune Monitoring and Analysis Centers and Cancer Immunologic Data Commons (CIMAC-CIDC).Clin Cancer Res2021
33323402Cross-Site Concordance Evaluation of Tumor DNA and RNA Sequencing Platforms for the CIMAC-CIDC Network.Clin Cancer Res2021
33625877OncoTree: A Cancer Classification System for Precision Oncology.JCO Clin Cancer Inform2021
34252935OncoThreads: visualization of large-scale longitudinal cancer molecular data.Bioinformatics2021
33419780Network for Biomarker Immunoprofiling for Cancer Immunotherapy: Cancer Immune Monitoring and Analysis Centers and Cancer Immunologic Data Commons (CIMAC-CIDC).Clin Cancer Res2021
33323402Cross-Site Concordance Evaluation of Tumor DNA and RNA Sequencing Platforms for the CIMAC-CIDC Network.Clin Cancer Res2021
32246132A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.Nat Genet2020
31647099Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.Nucleic Acids Res2020
32246132A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.Nat Genet2020
31647099Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.Nucleic Acids Res2020
32923853Identifying <i>ERBB2</i> Activating Mutations in HER2-Negative Breast Cancer: Clinical Impact of Institute-Wide Genomic Testing and Enrollment in Matched Therapy Trials.JCO Precis Oncol2019
32923853Identifying <i>ERBB2</i> Activating Mutations in HER2-Negative Breast Cancer: Clinical Impact of Institute-Wide Genomic Testing and Enrollment in Matched Therapy Trials.JCO Precis Oncol2019
29315417Interactive or static reports to guide clinical interpretation of cancer genomics.J Am Med Inform Assoc2018
29315417Interactive or static reports to guide clinical interpretation of cancer genomics.J Am Med Inform Assoc2018
27882345Institutional implementation of clinical tumor profiling on an unselected cancer population.JCI Insight2016
27882345Institutional implementation of clinical tumor profiling on an unselected cancer population.JCI Insight2016
25204415The landscape of kinase fusions in cancer.Nat Commun2014
25233892Genomic analyses of gynaecologic carcinosarcomas reveal frequent mutations in chromatin remodelling genes.Nat Commun2014
25204415The landscape of kinase fusions in cancer.Nat Commun2014
25233892Genomic analyses of gynaecologic carcinosarcomas reveal frequent mutations in chromatin remodelling genes.Nat Commun2014
23232854BRCA1 immunohistochemistry in a molecularly characterized cohort of ovarian high-grade serous carcinomas.Am J Surg Pathol2013
23766416PiHelper: an open source framework for drug-target and antibody-target data.Bioinformatics2013
23232854BRCA1 immunohistochemistry in a molecularly characterized cohort of ovarian high-grade serous carcinomas.Am J Surg Pathol2013
23550210Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.Sci Signal2013
23504936Using MEMo to discover mutual exclusivity modules in cancer.Curr Protoc Bioinformatics2013
23766416PiHelper: an open source framework for drug-target and antibody-target data.Bioinformatics2013
23504936Using MEMo to discover mutual exclusivity modules in cancer.Curr Protoc Bioinformatics2013
23550210Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.Sci Signal2013
21908773Mutual exclusivity analysis identifies oncogenic network modules.Genome Res2012
22851646Comparative oncogenomics implicates the neurofibromin 1 gene (NF1) as a breast cancer driver.Genetics2012
22588877The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.Cancer Discov2012
21908773Mutual exclusivity analysis identifies oncogenic network modules.Genome Res2012
22851646Comparative oncogenomics implicates the neurofibromin 1 gene (NF1) as a breast cancer driver.Genetics2012
22588877The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.Cancer Discov2012
21071392Pathway Commons, a web resource for biological pathway data.Nucleic Acids Res2011
21071392Pathway Commons, a web resource for biological pathway data.Nucleic Acids Res2011
20169195Automated network analysis identifies core pathways in glioblastoma.PLoS One2010
20169195Automated network analysis identifies core pathways in glioblastoma.PLoS One2010
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Jill P Mesirov
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Collaborators

Chris Sander
Broad Institute of MIT and Harvard
Co-authored papers 11
Nikolaus Schultz
Memorial Sloan Kettering Cancer Center
Co-authored papers 10
Benjamin E Gross
Memorial Sloan Kettering Cancer Center
Co-authored papers 7
Tali Mazor
Co-authored papers 6
Jianjiong Gao
Memorial Sloan Kettering Cancer Center
Co-authored papers 5
Gary D Bader
University of Toronto
Co-authored papers 5
Bülent Arman Aksoy
Co-authored papers 5
Laura E MacConaill
Co-authored papers 5
Ugur Dogrusoz
Bilkent University
Co-authored papers 3
Emek Demir
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 3
Debyani Chakravarty
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Nikhil Wagle
Dana-Farber Cancer Institute
Co-authored papers 2
Robert A Soslow
Co-authored papers 2
Selcuk Onur Sumer
Co-authored papers 2
Eric P Winer
Dana-Farber Cancer Institute
Co-authored papers 2
Nils Gehlenborg
Harvard Medical School
Co-authored papers 2
Barry S Taylor
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Nils Gehlenborg
Co-authored papers 2
Boris Reva
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Xiaole Shirley Liu
Co-authored papers 2
Anders Jacobsen Skanderup
Co-authored papers 2
Qianwen Wang
Co-authored papers 2
Ana C Garrido-Castro
Co-authored papers 2
Nancy U Lin
Co-authored papers 2
Ozgun Babur
Houston Methodist Research Institute
Co-authored papers 2
Yichao Sun
Co-authored papers 2
Giovanni Ciriello
University of Lausanne (UNIL)
Co-authored papers 2
Nicolas Stransky
Co-authored papers 2
Catherine J Wu
Co-authored papers 2
Erik Larsson
Co-authored papers 2
Release 1.2