Author details

Full Name

Chengfei Yan

Affiliation

Huazhong University of Science and Technology

ORCID

Career Start Year

2013

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36790631	Preparation and pH Detection Performance of Rosin-Based Fluorescent Polyurethane Microspheres.	J Fluoresc	2023
36759333	Improved inter-protein contact prediction using dimensional hybrid residual networks and protein language models.	Brief Bioinform	2023
36790631	Preparation and pH Detection Performance of Rosin-Based Fluorescent Polyurethane Microspheres.	J Fluoresc	2023
36759333	Improved inter-protein contact prediction using dimensional hybrid residual networks and protein language models.	Brief Bioinform	2023
35037015	A reproducibility analysis-based statistical framework for residue-residue evolutionary coupling detection.	Brief Bioinform	2022
35649388	Protein complex structure prediction powered by multiple sequence alignments of interologs from multiple taxonomic ranks and AlphaFold2.	Brief Bioinform	2022
35037015	A reproducibility analysis-based statistical framework for residue-residue evolutionary coupling detection.	Brief Bioinform	2022
35649388	Protein complex structure prediction powered by multiple sequence alignments of interologs from multiple taxonomic ranks and AlphaFold2.	Brief Bioinform	2022
34448830	Improved protein contact prediction using dimensional hybrid residual networks and singularity enhanced loss function.	Brief Bioinform	2021
34448830	Improved protein contact prediction using dimensional hybrid residual networks and singularity enhanced loss function.	Brief Bioinform	2021
32737473	Supervised enhancer prediction with epigenetic pattern recognition and targeted validation.	Nat Methods	2020
32737473	Supervised enhancer prediction with epigenetic pattern recognition and targeted validation.	Nat Methods	2020
31142351	Genomics and data science: an application within an umbrella.	Genome Biol	2019
31142351	Genomics and data science: an application within an umbrella.	Genome Biol	2019
31279629	Building a Hybrid Physical-Statistical Classifier for Predicting the Effect of Variants Related to Protein-Drug Interactions.	Structure	2019
31279629	Building a Hybrid Physical-Statistical Classifier for Predicting the Effect of Variants Related to Protein-Drug Interactions.	Structure	2019
30368849	MDockPeP: An ab-initio protein-peptide docking server.	J Comput Chem	2018
30545857	Comprehensive functional genomic resource and integrative model for the human brain.	Science	2018
30368849	MDockPeP: An ab-initio protein-peptide docking server.	J Comput Chem	2018
30545857	Comprehensive functional genomic resource and integrative model for the human brain.	Science	2018
27802576	Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions.	Proteins	2017
28668990	Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015.	J Comput Aided Mol Des	2017
28369339	HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps.	Bioinformatics	2017
27802576	Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions.	Proteins	2017
28236229	The Usage of ACCLUSTER for Peptide Binding Site Prediction.	Methods Mol Biol	2017
28369339	HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps.	Bioinformatics	2017
28236229	The Usage of ACCLUSTER for Peptide Binding Site Prediction.	Methods Mol Biol	2017
28668990	Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015.	J Comput Aided Mol Des	2017
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
26389744	Iterative Knowledge-Based Scoring Functions Derived from Rigid and Flexible Decoy Structures: Evaluation with the 2013 and 2014 CSAR Benchmarks.	J Chem Inf Model	2016
27642160	Fully Blind Docking at the Atomic Level for Protein-Peptide Complex Structure Prediction.	Structure	2016
26389744	Iterative Knowledge-Based Scoring Functions Derived from Rigid and Flexible Decoy Structures: Evaluation with the 2013 and 2014 CSAR Benchmarks.	J Chem Inf Model	2016
27642160	Fully Blind Docking at the Atomic Level for Protein-Peptide Complex Structure Prediction.	Structure	2016
25363279	Predicting peptide binding sites on protein surfaces by clustering chemical interactions.	J Comput Chem	2015
25363279	Predicting peptide binding sites on protein surfaces by clustering chemical interactions.	J Comput Chem	2015
25781365	Computation and simulation of the structural characteristics of the kidney urea transporter and behaviors of urea transport.	J Phys Chem B	2015
25781365	Computation and simulation of the structural characteristics of the kidney urea transporter and behaviors of urea transport.	J Phys Chem B	2015
24245741	A chemical genetic approach demonstrates that MPK3/MPK6 activation and NADPH oxidase-mediated oxidative burst are two independent signaling events in plant immunity.	Plant J	2014
24245741	A chemical genetic approach demonstrates that MPK3/MPK6 activation and NADPH oxidase-mediated oxidative burst are two independent signaling events in plant immunity.	Plant J	2014
23656179	Automated large-scale file preparation, docking, and scoring: evaluation of ITScore and STScore using the 2012 Community Structure-Activity Resource benchmark.	J Chem Inf Model	2013
24227686	Inclusion of the orientational entropic effect and low-resolution experimental information for protein-protein docking in Critical Assessment of PRedicted Interactions (CAPRI).	Proteins	2013
23656179	Automated large-scale file preparation, docking, and scoring: evaluation of ITScore and STScore using the 2012 Community Structure-Activity Resource benchmark.	J Chem Inf Model	2013
24227686	Inclusion of the orientational entropic effect and low-resolution experimental information for protein-protein docking in Critical Assessment of PRedicted Interactions (CAPRI).	Proteins	2013

1 - 44 of 44

Neeladri Sen

Institute of Structural and Molecular Biology, University College London

Career Start Year 2017

Number of shared co-authors 3

Chengxin Zhang

University of Michigan ann arbor

Career Start Year 2017

Number of shared co-authors 4

Chen Li

Biomedicine Discovery Institute, Monash University

Career Start Year 2015

Number of shared co-authors 0

Jie Hou

Saint Louis University

Career Start Year 2015

Number of shared co-authors 41

Wei Zheng

University of Michigan ann arbor

Career Start Year 2013

Number of shared co-authors 2

Renzhi Cao

Pacific Lutheran University

Career Start Year 2013

Number of shared co-authors 9

Zheng Wang

University of Miami

Career Start Year 2009

Number of shared co-authors 3

Sheng Wang

University of Texas at Arlington

Career Start Year 2008

Number of shared co-authors 0

Raquel Dias

University of Florida

Career Start Year 2008

Number of shared co-authors 0

Nan Zhao

Department of Computer Science and Informatics Institute, University of Missouri

Career Start Year 2007

Number of shared co-authors 30

Guillaume Launay

CNRS UMR 5086 and Universite Claude Bernard Lyon 1

Career Start Year 2007

Number of shared co-authors 3

Xin Gao

King Abdullah University of Science and Technology (KAUST)

Career Start Year 2007

Number of shared co-authors 2

Jaume Bonet

Institute of Bioengineering, Ecole Polytechnique Federale de Lausanne

Career Start Year 2006

Number of shared co-authors 7

Jiangning Song

Monash Data Futures Institute, Monash University

Career Start Year 2004

Number of shared co-authors 0

Dongsup Kim

Korea Advanced Institute of Science and Technology

Career Start Year 2003

Number of shared co-authors 0

Jinbo Xu

Toyota Technological Institute at Chicago

Career Start Year 2003

Number of shared co-authors 0

Dmitry Korkin

Worcester Polytechnic Institute

Career Start Year 2002

Number of shared co-authors 31

Yang Zhang

University of Michigan ann arbor

Career Start Year 2002

Number of shared co-authors 12

Jun-Tao Guo

University of North Carolina at Charlotte

Career Start Year 1999

Number of shared co-authors 0

Dong Xu

University of Missouri

Career Start Year 1998

Number of shared co-authors 5

Daron M Standley

Osaka university

Career Start Year 1998

Number of shared co-authors 40

Mallur S Madhusudhan

Indian Institute of Science Education and Research Pune

Career Start Year 1996

Number of shared co-authors 2

Haim J Wolfson

Tel Aviv University

Career Start Year 1991

Number of shared co-authors 36

Baldo Oliva

Universitat Pompeu Fabra

Career Start Year 1991

Number of shared co-authors 4

Carlos J Camacho

University of Pittsburgh

Career Start Year 1990

Number of shared co-authors 22

Ram Samudrala

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1990

Number of shared co-authors 1

Roland L Dunbrack

Fox Chase Cancer Center

Career Start Year 1989

Number of shared co-authors 23

Ruben Abagyan

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 1981

Number of shared co-authors 3

Haruki Nakamura

Institute for Protein Research, Osaka University

Career Start Year 1980

Number of shared co-authors 40

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 7

row(s) 1 - 30 of 30

Xiaoqin Zou

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 12

Xianjin Xu

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 6

Mark Gerstein

Yale University

Co-authored papers 5

Zhiwei Ma

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 3

Sheng-You Huang

Huazhong University of Science and Technology

Co-authored papers 3

Mengting Gu

Co-authored papers 3

Shaoke Lou

Co-authored papers 2

Fabio C P Navarro

Yale University

Co-authored papers 2

Prashant S Emani

Co-authored papers 2

Koon-Kiu Yan

Co-authored papers 2

Liming Qiu

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 2

Yucheng T Yang

Co-authored papers 2

Zhiping Weng

University of Massachusetts Medical School

Co-authored papers 2

Michael J Gandal

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 1

Jing Zhang

Co-authored papers 1

Tyler Borrman

University of Massachusetts Medical School

Co-authored papers 1

Panagiotis L Kastritis

Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg

Co-authored papers 1

Jilong Li

Qiagen Inc.

Co-authored papers 1

Keehyoung Joo

Center for Advanced Computation, Korea Institute for Advanced Study

Co-authored papers 1

Jonathan Warrell

Co-authored papers 1

Diane E Dickel

Co-authored papers 1

Ivan Anishchenko

University of Washington

Co-authored papers 1

Petras J Kundrotas

The University of Kansas

Co-authored papers 1

Eiichiro Ichiishi

International University of Health and Welfare (IUHV Hospital)

Co-authored papers 1

Anisah W Ghoorah

University of Mauritius

Co-authored papers 1

Neil J Bruce

Heidelberg Institute for Theoretical Studies (HITS)

Co-authored papers 1

Suhn K Rhie

Keck School of Medicine of USC

Co-authored papers 1

Veena Afzal

Co-authored papers 1

Dmitri Beglov

Boston University

Co-authored papers 1

James A Knowles

Co-authored papers 1

1 - 30

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