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Author Details

Chris Gaiteri
SUNY Upstate Medical University
2009
55
25
PMIDPaper TitleJournal TitlePublished Year
36993652Benchmarking of deep neural networks for predicting personal gene expression from DNA sequence highlights shortcomings.bioRxiv2023
37963017The molecular genetic landscape of human brain size variation.Cell Rep2023
37628148Network Analytics Enabled by Generating a Pool of Network Variants from Noisy Data.Entropy (Basel)2023
37546752A Molecular Basis of Human Brain Connectivity.bioRxiv2023
37828545Robust, scalable, and informative clustering for diverse biological networks.Genome Biol2023
38036778Benchmarking of deep neural networks for predicting personal gene expression from DNA sequence highlights shortcomings.Nat Genet2023
37923721Dissecting the human leptomeninges at single-cell resolution.Nat Commun2023
35115553Inferring protein expression changes from mRNA in Alzheimer's dementia using deep neural networks.Nat Commun2022
35907208Aging the brain: multi-region methylation principal component based clock in the context of Alzheimer's disease.Aging (Albany NY)2022
35115731Large-scale deep multi-layer analysis of Alzheimer's disease brain reveals strong proteomic disease-related changes not observed at the RNA level.Nat Neurosci2022
33446646A cortical immune network map identifies distinct microglial transcriptional programs associated with β-amyloid and Tau pathologies.Transl Psychiatry2021
34473944Stem cell-derived neurons reflect features of protein networks, neuropathology, and cognitive outcome of their aged human donors.Neuron2021
34807913Cascading epigenomic analysis for identifying disease genes from the regulatory landscape of GWAS variants.PLoS Genet2021
34050212Cortical proteins may provide motor resilience in older adults.Sci Rep2021
32526197Genetics of Gene Expression in the Aging Human Brain Reveal TDP-43 Proteinopathy Pathophysiology.Neuron2020
31674729Quantitative Systems Pharmacology for Neuroscience Drug Discovery and Development: Current Status, Opportunities, and Challenges.CPT Pharmacometrics Syst Pharmacol2020
32804935Deconvolving the contributions of cell-type heterogeneity on cortical gene expression.PLoS Comput Biol2020
32817302Identifying the molecular systems that influence cognitive resilience to Alzheimer's disease in genetically diverse mice.Learn Mem2020
32671330Deep learning decodes the principles of differential gene expression.Nat Mach Intell2020
32668255Meta-Analysis of the Alzheimer's Disease Human Brain Transcriptome and Functional Dissection in Mouse Models.Cell Rep2020
30651386Physical activity, common brain pathologies, and cognition in community-dwelling older adults.Neurology2019
29934819Gene expression and DNA methylation are extensively coordinated with MRI-based brain microstructural characteristics.Brain Imaging Behav2019
31582723Genetic risk for Alzheimer's dementia predicts motor deficits through multi-omic systems in older adults.Transl Psychiatry2019
31404102Cognition may link cortical IGFBP5 levels with motor function in older adults.PLoS One2019
31479860Microstructural changes in the brain mediate the association of AK4, IGFBP5, HSPB2, and ITPK1 with cognitive decline.Neurobiol Aging2019
31447098Using Transcriptomic Hidden Variables to Infer Context-Specific Genotype Effects in the Brain.Am J Hum Genet2019
31009033Association of Cortical β-Amyloid Protein in the Absence of Insoluble Deposits With Alzheimer Disease.JAMA Neurol2019
30321502APOE genotypes as a risk factor for age-dependent accumulation of cerebrovascular disease in older adults.Alzheimers Dement2019
28957994Association Between Quantitative Gait and Balance Measures and Total Daily Physical Activity in Community-Dwelling Older Adults.J Gerontol A Biol Sci Med Sci2018
29802388A molecular network of the aging human brain provides insights into the pathology and cognitive decline of Alzheimer's disease.Nat Neurosci2018
29908079Targeted brain proteomics uncover multiple pathways to Alzheimer's dementia.Ann Neurol2018
30180184Seasonal plasticity of cognition and related biological measures in adults with and without Alzheimer disease: Analysis of multiple cohorts.PLoS Med2018
30041668Polygenic analysis of inflammatory disease variants and effects on microglia in the aging brain.Mol Neurodegener2018
30140277Multi-omic Directed Networks Describe Features of Gene Regulation in Aged Brains and Expand the Set of Genes Driving Cognitive Decline.Front Genet2018
30084846A multi-omic atlas of the human frontal cortex for aging and Alzheimer's disease research.Sci Data2018
30349450The Molecular and Neuropathological Consequences of Genetic Risk for Alzheimer's Dementia.Front Neurosci2018
29752306<i>APOE</i> ε2ε4 genotype, incident AD and MCI, cognitive decline, and AD pathology in older adults.Neurology2018
28869584An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome.Nat Neurosci2017
28108637<i>TOMM40</i>'523 variant and cognitive decline in older persons with <i>APOE</i> ε3/3 genotype.Neurology2017
29084334Association Between Brain Gene Expression, DNA Methylation, and Alteration of Ex Vivo Magnetic Resonance Imaging Transverse Relaxation in Late-Life Cognitive Decline.JAMA Neurol2017
28672022APOE ε4-TOMM40 '523 haplotypes and the risk of Alzheimer's disease in older Caucasian and African Americans.PLoS One2017
27282653Genetic variants in Alzheimer disease - molecular and brain network approaches.Nat Rev Neurol2016
30533503Supporting novel biomedical research via multilayer collaboration networks.Appl Netw Sci2016
25631319Bayesian network reconstruction using systems genetics data: comparison of MCMC methods.Genetics2015
26549511Identifying robust communities and multi-community nodes by combining top-down and bottom-up approaches to clustering.Sci Rep2015
26003740Association of DNA methylation in the brain with age in older persons is confounded by common neuropathologies.Int J Biochem Cell Biol2015
24320616Beyond modules and hubs: the potential of gene coexpression networks for investigating molecular mechanisms of complex brain disorders.Genes Brain Behav2014
25441836Morton's foot and pyridoxal 5'-phosphate deficiency: genetically linked traits.Med Hypotheses2014
23582655Variants in triggering receptor expressed on myeloid cells 2 are associated with both behavioral variant frontotemporal lobar degeneration and Alzheimer's disease.Neurobiol Aging2013
23622250Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease.Cell2013
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Collaborators

Rush University Medical Center
Co-authored papers 39
Columbia University Medical Center
Co-authored papers 30
Rush University Medical Center
Co-authored papers 20
University of British Columbia and BC Children's Hospital
Co-authored papers 15
Pacific Northwest National Laboratory
Co-authored papers 8
Columbia University Irving Medical Center
Co-authored papers 7
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Co-authored papers 5
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Goizueta Alzheimer's Disease Research Center, Emory University School of Medicine
Co-authored papers 3
Graduate School of Medicine, The University of Tokyo
Co-authored papers 3
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Co-authored papers 3
Mayo Clinic
Co-authored papers 2
Foundational Neuroscience Center, Inc.
Co-authored papers 2
The University of Michigan ann arbor
Co-authored papers 2
University of Pittsburgh School of Public Health
Co-authored papers 2
University of Pittsburgh
Co-authored papers 2
University of Washington
Co-authored papers 2
Columbia University Irving Medical Center, New York Presbyterian Hospital
Co-authored papers 2
Harvard Medical School
Co-authored papers 2
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
University of Wisconsin-Madison.
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University of Pittsburgh
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Children's Hospital Oakland Research Institute
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Pacific Northwest National Laboratory
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Institute for Systems Biology
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Goizueta Alzheimer's Disease Research Center, Emory University School of Medicine
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Center for Genomic Medicine, Massachusetts General Hospital
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Baylor College of Medicine
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