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Author Details

Alan Keith Dunker
Center for Computational Biology, Indiana University School of Medicine
1969
253
94
PMIDPaper TitleJournal TitlePublished Year
35142523Computational, Experimental, and Clinical Evidence of a Specific but Peculiar Evolutionary Nature of (COVID-19) SARS-CoV-2.J Proteome Res2022
35625559Shell Disorder Models Detect That Omicron Has Harder Shells with Attenuation but Is Not a Descendant of the Wuhan-Hu-1 SARS-CoV-2.Biomolecules2022
36291562A Study on the Nature of SARS-CoV-2 Using the Shell Disorder Models: Reproducibility, Evolution, Spread, and Attenuation.Biomolecules2022
35882686Lighting up Nobel Prize-winning studies with protein intrinsic disorder.Cell Mol Life Sci2022
35275927Characterization of intrinsically disordered regions in proteins informed by human genetic diversity.PLoS Comput Biol2022
35177069Intrinsically disordered proteins play diverse roles in cell signaling.Cell Commun Signal2022
33119734DescribePROT: database of amino acid-level protein structure and function predictions.Nucleic Acids Res2021
33739538Enzyme catalysis prior to aromatic residues: Reverse engineering of a dephospho-CoA kinase.Protein Sci2021
33691012Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysis.Pac Symp Biocomput2021
34461937On the roles of intrinsically disordered proteins and regions in cell communication and signaling.Cell Commun Signal2021
32244041Shell disorder analysis predicts greater resilience of the SARS-CoV-2 (COVID-19) outside the body and in body fluids.Microb Pathog2020
31713636DisProt: intrinsic protein disorder annotation in 2020.Nucleic Acids Res2020
31797594Many-to-one binding by intrinsically disordered protein regions.Pac Symp Biocomput2020
33006287A Novel Strategy for the Development of Vaccines for SARS-CoV-2 (COVID-19) and Other Viruses Using AI and Viral Shell Disorder.J Proteome Res2020
32696351Computational Prediction of Intrinsic Disorder in Protein Sequences with the disCoP Meta-predictor.Methods Mol Biol2020
31299122Intrinsically disordered domains: Sequence â¿¿ disorder â¿¿ function relationships.Protein Sci2019
31698857Zika and Flavivirus Shell Disorder: Virulence and Fetal Morbidity.Biomolecules2019
32336912Entropy, Fluctuations, and Disordered Proteins.Entropy (Basel)2019
28714803Comparing NMR and X-ray protein structure: Lindemann-like parameters and NMR disorder.J Biomol Struct Dyn2018
30177944Evolution of Protein Ductility in Duplicated Genes of Plants.Front Plant Sci2018
29719237Regulating Protein Function by Delayed Folding.Structure2018
29626537Intrinsically Disordered Proteins Link Alternative Splicing and Post-translational Modifications to Complex Cell Signaling and Regulation.J Mol Biol2018
29394379The evolutionary origins of cell type diversification and the role of intrinsically disordered proteins.J Exp Bot2018
29228892Sequence fingerprints distinguish erroneous from correct predictions of intrinsically disordered protein regions.J Biomol Struct Dyn2018
27965415Corrigendum: DisProt 7.0: a major update of the database of disordered proteins.Nucleic Acids Res2017
28430951Evidence for a Strong Correlation Between Transcription Factor Protein Disorder and Organismic Complexity.Genome Biol Evol2017
28328918Simultaneous quantification of protein order and disorder.Nat Chem Biol2017
28145059Time, space, and disorder in the expanding proteome universe.Proteomics2017
27899601DisProt 7.0: a major update of the database of disordered proteins.Nucleic Acids Res2017
27102744Correlating Flavivirus virulence and levels of intrinsic disorder in shell proteins: protective roles vs. immune evasion.Mol Biosyst2016
26651072Molecular recognition features (MoRFs) in three domains of life.Mol Biosyst2016
27270343Prostate-associated gene 4 (PAGE4), an intrinsically disordered cancer/testis antigen, is a novel therapeutic target for prostate cancer.Asian J Androl2016
27557078Lipopolysaccharide treatment induces genome-wide pre-mRNA splicing pattern changes in mouse bone marrow stromal stem cells.BMC Genomics2016
25307499Intrinsically disordered proteins and multicellular organisms.Semin Cell Dev Biol2015
26387098Back to the Future: Nuclear Magnetic Resonance and Bioinformatics Studies on Intrinsically Disordered Proteins.Adv Exp Med Biol2015
26080321Shell disorder, immune evasion and transmission behaviors among human and animal retroviruses.Mol Biosyst2015
26227315Erratum to: Improving protein order-disorder classification using charge-hydropathy plots.BMC Bioinformatics2015
26086270Detection of links between Ebola nucleocapsid and virulence using disorder analysis.Mol Biosyst2015
25767796Rethinking gene regulatory networks in light of alternative splicing, intrinsically disordered protein domains, and post-translational modifications.Front Cell Dev Biol2015
25424537Intrinsic disorder mediates hepatitis C virus core-host cell protein interactions.Protein Sci2015
23942625A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome.Cell Mol Life Sci2014
25559583Improving protein order-disorder classification using charge-hydropathy plots.BMC Bioinformatics2014
25559354Identification of genes and pathways involved in kidney renal clear cell carcinoma.BMC Bioinformatics2014
25559210Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms.BMC Bioinformatics2014
25558922The emerging genomics and systems biology research lead to systems genomics studies.BMC Genomics2014
24773235Classification of intrinsically disordered regions and proteins.Chem Rev2014
24888500The structural and functional signatures of proteins that undergo multiple events of post-translational modification.Protein Sci2014
24606139Intrinsically disordered proteins and intrinsically disordered protein regions.Annu Rev Biochem2014
24174539pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins.Nucleic Acids Res2014
23142703An assignment of intrinsically disordered regions of proteins based on NMR structures.J Struct Biol2013
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University of California at Berkeley
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Indiana University
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University of the Basque Country
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Massachusetts General Hospital and Harvard Medical School
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University of Missouri
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John A. Burns School of Medicine, University of Hawaii at Manoa
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Institute of Enzymology, HUN-REN Research Centre for Natural Sciences
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Medical Research Council Laboratory of Molecular Biology
Co-authored papers 4
Huadong Hospital Affiliated to Fudan University
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St. Jude Children's Research Hospital
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Massachusetts General Hospital
Co-authored papers 4
Institute of Enzymology, HUN-REN Research Centre for Natural Sciences
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Weizmann Institute of Science
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National Center for Toxicological Research
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The Institute of Cancer Research
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University of Padova
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