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Author Details

Kristoffer Forslund
Max Delbruck Center for Molecular Medicine (MDC)
2003
51
30
PMIDPaper TitleJournal TitlePublished Year
37244472Mutant phosphodiesterase 3A protects the kidney from hypertension-induced damage.Kidney Int2023
37730687Evidence of a causal and modifiable relationship between kidney function and circulating trimethylamine N-oxide.Nat Commun2023
34237339Skin Sodium Accumulates in Psoriasis and Reflects Disease Severity.J Invest Dermatol2022
35177860Microbiome and metabolome features of the cardiometabolic disease spectrum.Nat Med2022
35323968Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes.Nucleic Acids Res2022
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34880489Combinatorial, additive and dose-dependent drug-microbiome associations.Nature2021
30403636Using Unlabeled Data to Discover Bivariate Causality with Deep Restricted Boltzmann Machines.IEEE/ACM Trans Comput Biol Bioinform2020
30658995Antibiotics-induced monodominance of a novel gut bacterial order.Gut2019
31727896Elevated aldosterone and blood pressure in a mouse model of familial hyperaldosteronism with ClC-2 mutation.Nat Commun2019
31660857Domainoid: domain-oriented orthology inference.BMC Bioinformatics2019
31241141Advances and Applications in the Quest for Orthologs.Mol Biol Evol2019
31278674Evolution of Protein Domain Architectures.Methods Mol Biol2019
28968857Gearing up to handle the mosaic nature of life in the quest for orthologs.Bioinformatics2018
29551265Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance.Cell2018
28039159Gut microbiota differs between children with Inflammatory Bowel Disease and healthy siblings in taxonomic and functional composition: a metagenomic analysis.Am J Physiol Gastrointest Liver Physiol2017
28460117Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper.Mol Biol Evol2017
28398468RTK: efficient rarefaction analysis of large datasets.Bioinformatics2017
28470190Corrigendum: Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.Nature2017
29143823Salt-responsive gut commensal modulates T<sub>H</sub>17 axis and disease.Nature2017
29242367Subspecies in the global human gut microbiome.Mol Syst Biol2017
28053165proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes.Nucleic Acids Res2017
26811868Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children.Nat Commun2016
26582926eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.Nucleic Acids Res2016
27409811Human gut microbes impact host serum metabolome and insulin sensitivity.Nature2016
27256311Benchmarking the next generation of homology inference tools.Bioinformatics2016
27153620MOCAT2: a metagenomic assembly, annotation and profiling framework.Bioinformatics2016
27043882Standardized benchmarking in the quest for orthologs.Nat Methods2016
25352553STRING v10: protein-protein interaction networks, integrated over the tree of life.Nucleic Acids Res2015
26633628Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.Nature2015
26133389Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream.Genome Biol Evol2015
24474281Metagenomic insights into the human gut resistome and the forces that shape it.Bioessays2014
29805877Individuality and temporal stability of the human gut microbiome.Cent Asian J Glob Health2014
25369365A phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validation.PLoS One2014
24297252eggNOG v4.0: nested orthology inference across 3686 organisms.Nucleic Acids Res2014
23492829Biggest challenges in bioinformatics.EMBO Rep2013
23568836Country-specific antibiotic use practices impact the human gut resistome.Genome Res2013
22127870The Pfam protein families database.Nucleic Acids Res2012
22399460Evolution of protein domain architectures.Methods Mol Biol2012
21565935OrthoDisease: tracking disease gene orthologs across 100 species.Brief Bioinform2011
21819573Domain architecture conservation in orthologs.BMC Bioinformatics2011
19920124The Pfam protein families database.Nucleic Acids Res2010
20598118Orthology confers intron position conservation.BMC Genomics2010
19892828InParanoid 7: new algorithms and tools for eukaryotic orthology analysis.Nucleic Acids Res2010
19620098Benchmarking homology detection procedures with low complexity filters.Bioinformatics2009
18025066Domain tree-based analysis of protein architecture evolution.Mol Biol Evol2008
18591194Predicting protein function from domain content.Bioinformatics2008
18039703The Pfam protein families database.Nucleic Acids Res2008
17119010QNet: an agglomerative method for the construction of phylogenetic networks from weighted quartets.Mol Biol Evol2007
15247095VisRD--visual recombination detection.Bioinformatics2004
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Collaborators

Peer Bork
University of Wurzburg
Co-authored papers 26
Erik L L Sonnhammer
Stockholm University
Co-authored papers 17
Jeroen Raes
KU Leuven - University of Leuven
Co-authored papers 7
Manimozhiyan Arumugam
Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen
Co-authored papers 6
Torben Hansen
Co-authored papers 6
Oluf Pedersen
Co-authored papers 6
Christian von Mering
Co-authored papers 6
Paul I Costea
Weizmann Institute of Science
Co-authored papers 5
Lars Juhl Jensen
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Co-authored papers 5
Toni Gabald??n
Catalan Institution for Research and Advanced Studies
Co-authored papers 5
Ivica Letunic
Co-authored papers 4
Robert D Finn
European Bioinformatics Institute
Co-authored papers 4
Christophe Dessimoz
University of Lausanne
Co-authored papers 3
Penny Coggill
Co-authored papers 3
Georg Zeller
Max Planck Institute for Developmental Biology
Co-authored papers 3
Alex Bateman
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Jens Nielsen
Chalmers University of Technology
Co-authored papers 3
Jaina Mistry
Co-authored papers 3
Brigitte Boeckmann
Co-authored papers 3
John Tate
Co-authored papers 3
Suzanna E Lewis
Lawrence Berkeley National Laboratory
Co-authored papers 3
Michael Stumvoll
Co-authored papers 3
Torben Jørgensen
Co-authored papers 3
S??ren Brunak
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Co-authored papers 3
Athanasios Typas
University of California san francisco
Co-authored papers 3
Eran Segal
Weizmann Institute of Science
Co-authored papers 2
Paul D Thomas
University of Southern California
Co-authored papers 2
Salvador Capella-Gutierrez
Spanish National Bioinformatics Institute (INB/ELIXIR-ES)
Co-authored papers 2
Thomas Rattei
Co-authored papers 2
Maria J Martin
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Release 1.2