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Author Details

Gregory A Wray
Duke University
1988
140
46
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36711588Hybrid epigenomes reveal extensive local genetic changes to chromatin accessibility contribute to divergence in embryonic gene expression between species.bioRxiv2023
37823438Hybrid Epigenomes Reveal Extensive Local Genetic Changes to Chromatin Accessibility Contribute to Divergence in Embryonic Gene Expression Between Species.Mol Biol Evol2023
37280750Near-Chromosomal-Level Genome Assembly of the Sea Urchin Echinometra lucunter, a Model for Speciation in the Sea.Genome Biol Evol2023
36711588Hybrid epigenomes reveal extensive local genetic changes to chromatin accessibility contribute to divergence in embryonic gene expression between species.bioRxiv2023
37322563Feedback circuits are numerous in embryonic gene regulatory networks and offer a stabilizing influence on evolution of those networks.Evodevo2023
37823438Hybrid Epigenomes Reveal Extensive Local Genetic Changes to Chromatin Accessibility Contribute to Divergence in Embryonic Gene Expression Between Species.Mol Biol Evol2023
37322563Feedback circuits are numerous in embryonic gene regulatory networks and offer a stabilizing influence on evolution of those networks.Evodevo2023
37280750Near-Chromosomal-Level Genome Assembly of the Sea Urchin Echinometra lucunter, a Model for Speciation in the Sea.Genome Biol Evol2023
35152987Extreme phenotypic divergence and the evolution of development.Curr Top Dev Biol2022
36161313A Chromosome-level Genome Assembly of the Highly Heterozygous Sea Urchin Echinometra sp. EZ Reveals Adaptation in the Regulatory Regions of Stress Response Genes.Genome Biol Evol2022
35946348Evolutionary Changes in the Chromatin Landscape Contribute to Reorganization of a Developmental Gene Network During Rapid Life History Evolution in Sea Urchins.Mol Biol Evol2022
36266460Recent reconfiguration of an ancient developmental gene regulatory network in Heliocidaris sea urchins.Nat Ecol Evol2022
35152987Extreme phenotypic divergence and the evolution of development.Curr Top Dev Biol2022
36266460Recent reconfiguration of an ancient developmental gene regulatory network in Heliocidaris sea urchins.Nat Ecol Evol2022
36161313A Chromosome-level Genome Assembly of the Highly Heterozygous Sea Urchin Echinometra sp. EZ Reveals Adaptation in the Regulatory Regions of Stress Response Genes.Genome Biol Evol2022
35946348Evolutionary Changes in the Chromatin Landscape Contribute to Reorganization of a Developmental Gene Network During Rapid Life History Evolution in Sea Urchins.Mol Biol Evol2022
32939729Methodologies for Following EMT In Vivo at Single Cell Resolution.Methods Mol Biol2021
33487168The hard clam genome reveals massive expansion and diversification of inhibitors of apoptosis in Bivalvia.BMC Biol2021
34234124The epidemiology of Plasmodium vivax among adults in the Democratic Republic of the Congo.Nat Commun2021
33853946Microbiome reduction and endosymbiont gain from a switch in sea urchin life history.Proc Natl Acad Sci U S A2021
33676872Transcriptomic analysis of Nodal - and BMP- associated genes during development to the juvenile seastar in Parvulastra exigua (Asterinidae).Mar Genomics2021
33369127TBX5-encoded T-box transcription factor 5 variant T223M is associated with long QT syndrome and pediatric sudden cardiac death.Am J Med Genet A2021
32939729Methodologies for Following EMT In Vivo at Single Cell Resolution.Methods Mol Biol2021
34463740Developmental single-cell transcriptomics in the Lytechinus variegatus sea urchin embryo.Development2021
33853946Microbiome reduction and endosymbiont gain from a switch in sea urchin life history.Proc Natl Acad Sci U S A2021
33487168The hard clam genome reveals massive expansion and diversification of inhibitors of apoptosis in Bivalvia.BMC Biol2021
33676872Transcriptomic analysis of Nodal - and BMP- associated genes during development to the juvenile seastar in Parvulastra exigua (Asterinidae).Mar Genomics2021
34463740Developmental single-cell transcriptomics in the Lytechinus variegatus sea urchin embryo.Development2021
34234124The epidemiology of Plasmodium vivax among adults in the Democratic Republic of the Congo.Nat Commun2021
33369127TBX5-encoded T-box transcription factor 5 variant T223M is associated with long QT syndrome and pediatric sudden cardiac death.Am J Med Genet A2021
32404186Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral.BMC Genomics2020
32433766Chromosomal-Level Genome Assembly of the Sea Urchin Lytechinus variegatus Substantially Improves Functional Genomic Analyses.Genome Biol Evol2020
32404186Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral.BMC Genomics2020
32339242Transcriptomic analysis of sea star development through metamorphosis to the highly derived pentameral body plan with a focus on neural transcription factors.DNA Res2020
32284581Genetic basis for divergence in developmental gene expression in two closely related sea urchins.Nat Ecol Evol2020
33088633Positive selection within the genomes of SARS-CoV-2 and other Coronaviruses independent of impact on protein function.PeerJ2020
33002253Ocean acidification induces distinct transcriptomic responses across life history stages of the sea urchin Heliocidaris erythrogramma.Mol Ecol2020
33088633Positive selection within the genomes of SARS-CoV-2 and other Coronaviruses independent of impact on protein function.PeerJ2020
33002253Ocean acidification induces distinct transcriptomic responses across life history stages of the sea urchin Heliocidaris erythrogramma.Mol Ecol2020
32284581Genetic basis for divergence in developmental gene expression in two closely related sea urchins.Nat Ecol Evol2020
32339242Transcriptomic analysis of sea star development through metamorphosis to the highly derived pentameral body plan with a focus on neural transcription factors.DNA Res2020
32433766Chromosomal-Level Genome Assembly of the Sea Urchin Lytechinus variegatus Substantially Improves Functional Genomic Analyses.Genome Biol Evol2020
30820042Rudolf A. Raff (1941-2019).Nat Ecol Evol2019
31599933Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach.Genome Biol Evol2019
31772951Embryo microinjection of the lecithotrophic sea urchin <i>Heliocidaris erythrogramma</i>.J Biol Methods2019
30820042Rudolf A. Raff (1941-2019).Nat Ecol Evol2019
31233101Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates.Genome Biol Evol2019
31102332A comparative analysis of egg provisioning using mass spectrometry during rapid life history evolution in sea urchins.Evol Dev2019
31772951Embryo microinjection of the lecithotrophic sea urchin <i>Heliocidaris erythrogramma</i>.J Biol Methods2019
31233101Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates.Genome Biol Evol2019
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Collaborators

Courtney C Babbitt
University of Massachusetts Amherst, USA University of Massachusetts Amherst
Co-authored papers 22
Olivier Fedrigo
The Rockefeller University
Co-authored papers 14
Ralph Haygood
Ronin Institute for Independent Scholarship
Co-authored papers 13
David R McClay
Duke University
Co-authored papers 8
David A Garfield
Humboldt Universitat Berlin
Co-authored papers 7
Gregory E Crawford
Center for Genomic & Computational Biology, Duke University
Co-authored papers 6
Ehab Abouheif
McGill University
Co-authored papers 5
Jean Yee Hwa Yang
The University of Sydney
Co-authored papers 5
David B Goldstein
Institute for Genomic Medicine, Columbia University Irving Medical Center
Co-authored papers 4
Alexias Safi
Center for Genomic and Computational Biology, Duke University Medical Center
Co-authored papers 4
Nicole Soranzo
Wellcome Sanger Institute
Co-authored papers 4
Tonya F Severson
Department of Entomology and Cancer Research Center, University of California davis
Co-authored papers 3
Alexander Primus
Hubbs Seaworld Research Institute
Co-authored papers 3
Patrick R Hof
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Christine E Wall
Duke University
Co-authored papers 3
Yoichiro Shibata
Center for Genomic and Computational Biology, Duke University.
Co-authored papers 3
Charles A Ettensohn
Carnegie Mellon University
Co-authored papers 3
James P Balhoff
Renaissance Computing Institute, University of North Carolina
Co-authored papers 3
Pedro Martinez
Universitat de Barcelona
Co-authored papers 2
Schahram Akbarian
Co-authored papers 2
Daniel Janies
University of North Carolina at Charlotte
Co-authored papers 2
Pamela Sklar
Co-authored papers 2
Martin A Moseley
Center for Genomic and Computational Biology
Co-authored papers 2
Eric H Davidson
California Institute of Technology
Co-authored papers 2
Lingyun Song
Center for Genomic & Computational Biology, Duke University
Co-authored papers 2
Brian T Livingston
California State University
Co-authored papers 2
Panos Roussos
Co-authored papers 2
Kevin P White
Co-authored papers 2
Jonathan P Rast
Emory University
Co-authored papers 2
Albert J Poustka
Max-Planck-Institut fur Molekulare Genetik
Co-authored papers 2
Release 1.2