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Author Details

Christine Vogel
Center for Genomics and Systems Biology, New York University
2003
91
38
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37240211Ring Finger 149-Related Is an FGF/MAPK-Independent Regulator of Pharyngeal Muscle Fate Specification.Int J Mol Sci2023
34992265Author Correction: Protective role of the Arabidopsis leaf microbiota against a bacterial pathogen.Nat Microbiol2022
35654359New Views of Old Proteins: Clarifying the Enigmatic Proteome.Mol Cell Proteomics2022
35637327Mapping phyllosphere microbiota interactions in planta to establish genotype-phenotype relationships.Nat Microbiol2022
35757850Prevaccination Glycan Markers of Response to an Influenza Vaccine Implicate the Complement Pathway.J Proteome Res2022
35514207Evaluation of determinants of the serological response to the quadrivalent split-inactivated influenza vaccine.Mol Syst Biol2022
36044955Extracellular matrix stiffness regulates degradation of MST2 via SCF <sup>βTrCP</sup>.Biochim Biophys Acta Gen Subj2022
36366577Proteomic Signatures of the Serological Response to Influenza Vaccination in a Large Human Cohort Study.Viruses2022
36271494Meiotic DNA breaks activate a streamlined phospho-signaling response that largely avoids protein-level changes.Life Sci Alliance2022
35063095New horizons in the stormy sea of multimodal single-cell data integration.Mol Cell2022
33482097"Structuromics": another step toward a holistic view of the cell.Cell2021
33582300New Proteomic Signatures to Distinguish Between Zika and Dengue Infections.Mol Cell Proteomics2021
34819644Protective role of the Arabidopsis leaf microbiota against a bacterial pathogen.Nat Microbiol2021
34404904Integrated multi-omics analysis of RB-loss identifies widespread cellular programming and synthetic weaknesses.Commun Biol2021
34593978Author Correction: Integrated multi-omics analysis of RB-loss identifies widespread cellular programming and synthetic weaknesses.Commun Biol2021
34007033A general non-self response as part of plant immunity.Nat Plants2021
32855298Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress.Proc Natl Acad Sci U S A2020
31930623A protein-centric approach for exome variant aggregation enables sensitive association analysis with clinical outcomes.Hum Mutat2020
31859362Chemical chaperones reverse early suppression of regulatory circuits during unfolded protein response in B cells from common variable immunodeficiency patients.Clin Exp Immunol2020
32637829Simple Method to Quantify Protein Abundances from 1000 Cells.ACS Omega2020
30411623EBprotV2: A Perseus Plugin for Differential Protein Abundance Analysis of Labeling-Based Quantitative Proteomics Data.J Proteome Res2019
31312515iOmicsPASS: network-based integration of multiomics data for predictive subnetwork discovery.NPJ Syst Biol Appl2019
31482721Polyubiquitin Chains Linked by Lysine Residue 48 (K48) Selectively Target Oxidized Proteins <i>In Vivo</i>.Antioxid Redox Signal2019
31157617Stem cell-derived cranial and spinal motor neurons reveal proteostatic differences between ALS resistant and sensitive motor neurons.Elife2019
31126983Exploiting Interdata Relationships in Next-generation Proteomics Analysis.Mol Cell Proteomics2019
31036300Nucleobindins and encoded peptides: From cell signaling to physiology.Adv Protein Chem Struct Biol2019
30489083Site-Specific K63 Ubiquitinomics Provides Insights into Translation Regulation under Stress.J Proteome Res2019
29463605Phenazines Regulate Nap-Dependent Denitrification in Pseudomonas aeruginosa Biofilms.J Bacteriol2018
30038309Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome.Nat Microbiol2018
29876573PTMscape: an open source tool to predict generic post-translational modifications and map modification crosstalk in protein domains and biological processes.Mol Omics2018
30906903Integration of large-scale multi-omic datasets: a protein-centric view.Curr Opin Syst Biol2018
30514426Genome Mining-guided and MALDI Imaging-assisted Discovery of New Antibiotics.Chimia (Aarau)2018
30272558New insights into the cellular temporal response to proteostatic stress.Elife2018
29641998Condition-Specific Modeling of Biophysical Parameters Advances Inference of Regulatory Networks.Cell Rep2018
28799900Establishing Causality: Opportunities of Synthetic Communities for Plant Microbiome Research.Cell Host Microbe2017
28232536Quantifying protein (dis)order.Science2017
29263799PECAplus: statistical analysis of time-dependent regulatory changes in dynamic single-omics and dual-omics experiments.NPJ Syst Biol Appl2017
26205778BONLAC: A combinatorial proteomic technique to measure stimulus-induced translational profiles in brain slices.Neuropharmacology2016
27648643The Plant Microbiota: Systems-Level Insights and Perspectives.Annu Rev Genet2016
27951528Quantifying gene expression: the importance of being subtle.Mol Syst Biol2016
27306148The Arabidopsis leaf transcriptome reveals distinct but also overlapping responses to colonization by phyllosphere commensals and pathogen infection with impact on plant health.New Phytol2016
27353257A synopsis on aging-Theories, mechanisms and future prospects.Ageing Res Rev2016
27547793Time-course proteomics dataset monitoring HeLa cells subjected to DTT induced endoplasmic reticulum stress.Data Brief2016
26963258Systems Approaches to the Eukaryotic Stress Response.PLoS Comput Biol2016
26792871Differential dynamics of the mammalian mRNA and protein expression response to misfolding stress.Mol Syst Biol2016
26760575High-throughput analyses of hnRNP H1 dissects its multi-functional aspect.RNA Biol2016
25515586Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput.Wiley Interdiscip Rev RNA2015
26259698Next-generation analysis of gene expression regulation--comparing the roles of synthesis and degradation.Mol Biosyst2015
26184334Comprehensive Protein Interactome Analysis of a Key RNA Helicase: Detection of Novel Stress Granule Proteins.Biomolecules2015
26217776Mass spectrometry analysis of K63-ubiquitinated targets in response to oxidative stress.Data Brief2015
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Collaborators

Edward M Marcotte
University of Texas
Co-authored papers 17
Julia A Vorholt
Co-authored papers 10
Cyrus Chothia
Co-authored papers 7
Sarah A Teichmann
Wellcome Sanger Institute
Co-authored papers 7
Julian Gough
Medical Research Council Laboratory of Molecular Biology
Co-authored papers 5
Ted M Ross
Center for Vaccines and Immunology, University of Georgia
Co-authored papers 4
Guo Ci Teo
Co-authored papers 4
Rong Wang
Co-authored papers 4
Martin Madera
Co-authored papers 4
Derek Wilson
Co-authored papers 2
Elodie Ghedin
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 2
Damian Fermin
Co-authored papers 2
Wilhelm Haas
Co-authored papers 2
Richard Bonneau
Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation
Co-authored papers 2
Capucine Van Rechem
Stanford University School of Medicine
Co-authored papers 2
Daniel P Miranker
Department of Computer Sciences The University of Texas at Austin Austin
Co-authored papers 2
Pamela C Ronald
University of California davis
Co-authored papers 1
Marc Remke
and Clinical Immunology, Heinrich Heine University, University Hospital Dusseldorf
Co-authored papers 1
Dolores Hambardzumyan
Co-authored papers 1
Pavel A Pevzner
University of California
Co-authored papers 1
Thomas A Neubert
Neuroscience Institute, NYU Grossman School of Medicine
Co-authored papers 1
Stefan M Pfister
Hopp Children's Cancer Center Heidelberg (KiTZ)
Co-authored papers 1
Kristin E Burnum-Johnson
Pacific Northwest National Laboratory
Co-authored papers 1
Ryan T Kelly
Brigham Young University
Co-authored papers 1
Michael J MacCoss
University of Washington
Co-authored papers 1
David R Walt
Brigham and Women's Hospital
Co-authored papers 1
Alasdair Ivens
University of Washington School of Medicine
Co-authored papers 1
Neil L Kelleher
Northwestern University
Co-authored papers 1
Yang Bai
Co-authored papers 1
Christopher S Poultney
Co-authored papers 1
Release 1.2