Author details

Full Name

Alex Mitchell

Affiliation

European Bioinformatics Institute

ORCID

Career Start Year

1999

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37374986	Compositional Variations between Adult and Infant Skin Microbiome: An Update.	Microorganisms	2023
37374986	Compositional Variations between Adult and Infant Skin Microbiome: An Update.	Microorganisms	2023
36400841	Screening of global microbiomes implies ecological boundaries impacting the distribution and dissemination of clinically relevant antimicrobial resistance genes.	Commun Biol	2022
36400841	Screening of global microbiomes implies ecological boundaries impacting the distribution and dissemination of clinically relevant antimicrobial resistance genes.	Commun Biol	2022
33156333	The InterPro protein families and domains database: 20 years on.	Nucleic Acids Res	2021
33156333	The InterPro protein families and domains database: 20 years on.	Nucleic Acids Res	2021
32912302	Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC.	Genome Biol	2020
31696235	MGnify: the microbiome analysis resource in 2020.	Nucleic Acids Res	2020
31957879	Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics.	J Food Sci	2020
32912302	Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC.	Genome Biol	2020
31696235	MGnify: the microbiome analysis resource in 2020.	Nucleic Acids Res	2020
31957879	Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics.	J Food Sci	2020
30398656	InterPro in 2019: improving coverage, classification and access to protein sequence annotations.	Nucleic Acids Res	2019
30398656	InterPro in 2019: improving coverage, classification and access to protein sequence annotations.	Nucleic Acids Res	2019
30745586	A new genomic blueprint of the human gut microbiota.	Nature	2019
31118083	Microbial community drivers of PK/NRP gene diversity in selected global soils.	Microbiome	2019
30833550	Microbial abundance, activity and population genomic profiling with mOTUs2.	Nat Commun	2019
30833550	Microbial abundance, activity and population genomic profiling with mOTUs2.	Nat Commun	2019
31118083	Microbial community drivers of PK/NRP gene diversity in selected global soils.	Microbiome	2019
30745586	A new genomic blueprint of the human gut microbiota.	Nature	2019
29069476	EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.	Nucleic Acids Res	2018
29762668	Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments.	Gigascience	2018
29069476	EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.	Nucleic Acids Res	2018
29762668	Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments.	Gigascience	2018
27899635	InterPro in 2017-beyond protein family and domain annotations.	Nucleic Acids Res	2017
28637310	The metagenomic data life-cycle: standards and best practices.	Gigascience	2017
28620454	ELIXIR pilot action: Marine metagenomics - towards a domain specific set of sustainable services.	F1000Res	2017
27899635	InterPro in 2017-beyond protein family and domain annotations.	Nucleic Acids Res	2017
28620454	ELIXIR pilot action: Marine metagenomics - towards a domain specific set of sustainable services.	F1000Res	2017
28637310	The metagenomic data life-cycle: standards and best practices.	Gigascience	2017
26994912	GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations.	Database (Oxford)	2016
26994912	GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations.	Database (Oxford)	2016
26582919	EBI metagenomics in 2016--an expanding and evolving resource for the analysis and archiving of metagenomic data.	Nucleic Acids Res	2016
26578596	HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes.	Nucleic Acids Res	2016
26673716	The Pfam protein families database: towards a more sustainable future.	Nucleic Acids Res	2016
26673716	The Pfam protein families database: towards a more sustainable future.	Nucleic Acids Res	2016
26582919	EBI metagenomics in 2016--an expanding and evolving resource for the analysis and archiving of metagenomic data.	Nucleic Acids Res	2016
26578596	HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes.	Nucleic Acids Res	2016
25428371	The InterPro protein families database: the classification resource after 15 years.	Nucleic Acids Res	2015
25428371	The InterPro protein families database: the classification resource after 15 years.	Nucleic Acids Res	2015
24165880	EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.	Nucleic Acids Res	2014
24165880	EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.	Nucleic Acids Res	2014
24451626	InterProScan 5: genome-scale protein function classification.	Bioinformatics	2014
24451626	InterProScan 5: genome-scale protein function classification.	Bioinformatics	2014
23161678	Gene Ontology annotations and resources.	Nucleic Acids Res	2013
23203986	Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.	Nucleic Acids Res	2013
23161678	Gene Ontology annotations and resources.	Nucleic Acids Res	2013
23203986	Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.	Nucleic Acids Res	2013
22096229	InterPro in 2011: new developments in the family and domain prediction database.	Nucleic Acids Res	2012
22508994	The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012.	Database (Oxford)	2012

1 - 50 of 78

Jules Kerssemakers

German Cancer Research Center (DKFZ)

Career Start Year 2010

Number of shared co-authors 9

Chien-Chi Lo

Los Alamos National Laboratory

Career Start Year 2009

Number of shared co-authors 1

Salvador Capella-Gutierrez

Spanish National Bioinformatics Institute (INB/ELIXIR-ES)

Career Start Year 2009

Number of shared co-authors 17

Matthew R Laird

European Bioinformatics Institute

Career Start Year 2005

Number of shared co-authors 2

Joshua Orvis

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2004

Number of shared co-authors 8

Robert Olson

University of Chicago

Career Start Year 2003

Number of shared co-authors 1

Kristoffer Forslund

Max Delbruck Center for Molecular Medicine (MDC)

Career Start Year 2003

Number of shared co-authors 12

Vera van Noort

Leiden University, Institute of Biology Leiden

Career Start Year 2003

Number of shared co-authors 2

Alice C McHardy

Computational Biology of Infection Research, Helmholtz Centre for Infection Research

Career Start Year 2003

Number of shared co-authors 20

Evgeny M Zdobnov

University of Geneva

Career Start Year 2000

Number of shared co-authors 14

Alexander Sczyrba

Center for Biotechnology (CeBiTec), Bielefeld University, Universitatsstrasse 27

Career Start Year 2000

Number of shared co-authors 3

Jo??o C Setubal

Chemistry Institute, Universidade de Sao Paulo - USP

Career Start Year 2000

Number of shared co-authors 10

Kevin Bryson

University of Glasgow

Career Start Year 1999

Number of shared co-authors 22

James E Bray

University of Oxford

Career Start Year 1999

Number of shared co-authors 3

Shibu Yooseph

University of Central Florida

Career Start Year 1998

Number of shared co-authors 11

Jonathan Crabtree

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 1998

Number of shared co-authors 9

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 13

Ana Tereza Ribeiro de Vasconcelos

The National Laboratory for Scientific Computing (LNCC)

Career Start Year 1997

Number of shared co-authors 2

Tbk Reddy

DOE Joint Genome Institute, Lawrence Berkeley National Laboratory

Career Start Year 1997

Number of shared co-authors 10

Iddo Friedberg

Iowa State University

Career Start Year 1997

Number of shared co-authors 48

Thomas Brettin

University of Chicago

Career Start Year 1996

Number of shared co-authors 5

Fiona S L Brinkman

Simon Fraser University

Career Start Year 1995

Number of shared co-authors 5

John Parkinson

The Hospital for Sick Children

Career Start Year 1994

Number of shared co-authors 1

Steven E Brenner

University of California berkeley

Career Start Year 1994

Number of shared co-authors 32

Manesh Shah

University of Tennessee Knoxville

Career Start Year 1993

Number of shared co-authors 1

Granger Sutton

J. Craig Venter Institute

Career Start Year 1993

Number of shared co-authors 8

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Career Start Year 1992

Number of shared co-authors 25

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 12

Owen White

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 1988

Number of shared co-authors 35

Peter J A Cock

James Hutton Institute

Career Start Year 1974

Number of shared co-authors 3

row(s) 1 - 30 of 30

Robert D Finn

European Bioinformatics Institute

Co-authored papers 22

Teresa K Attwood

Co-authored papers 13

Sarah Hunter

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 10

Peer Bork

University of Wurzburg

Co-authored papers 9

Julian Gough

Medical Research Council Laboratory of Molecular Biology

Co-authored papers 9

Craig McAnulla

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 9

Amaia Sangrador-Vegas

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 9

Sebastien Pesseat

Co-authored papers 9

Christian J A Sigrist

Co-authored papers 8

Rodrigo Lopez

Co-authored papers 8

Maxim Scheremetjew

Co-authored papers 8

Christine Orengo

University College London, Institute of Structural and Molecular Biology

Co-authored papers 8

Alex Bateman

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 8

Paul D Thomas

University of Southern California

Co-authored papers 8

Ivica Letunic

Co-authored papers 8

Matthew Fraser

Co-authored papers 7

Cathy H Wu

Georgetown University Medical Center

Co-authored papers 7

Gift Nuka

Co-authored papers 6

John Maslen

Co-authored papers 6

Darren A Natale

Georgetown University Medical Center

Co-authored papers 6

Hsin-Yu Chang

Co-authored papers 6

Daniel H Haft

National Center for Biotechnology Information, National Institutes of Health

Co-authored papers 6

Simon C Potter

Co-authored papers 6

Huaiyu Mi

University of Southern California

Co-authored papers 6

Siew-Yit Yong

Co-authored papers 6

Guy Cochrane

European Bioinformatics Institute

Co-authored papers 6

Catherine Rivoire

carnegie mellon university

Co-authored papers 6

Nicola Mulder

University of Cape Town

Co-authored papers 5

David Lonsdale

Co-authored papers 5

Daniel Kahn

Co-authored papers 5

1 - 30

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