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Author Details

Peilin Jia
Center for Precision Health, The University of Texas Health Science Center at Houston
2006
168
42
PMIDPaper TitleJournal TitlePublished Year
36282535A gene regulatory network approach harmonizes genetic and epigenetic signals and reveals repurposable drug candidates for multiple sclerosis.Hum Mol Genet2023
35470070deCS: A Tool for Systematic Cell Type Annotations of Single-cell RNA Sequencing Data among Human Tissues.Genomics Proteomics Bioinformatics2023
36973285Rewired m<sup>6</sup>A epitranscriptomic networks link mutant p53 to neoplastic transformation.Nat Commun2023
36495164Integrated analysis of racial disparities in genomic architecture identifies a trans-ancestry prognostic subtype in bladder cancer.Mol Oncol2023
36863698De novo mutations disturb early brain development more frequently than common variants in schizophrenia.Am J Med Genet B Neuropsychiatr Genet2023
34634794CeDR Atlas: a knowledgebase of cellular drug response.Nucleic Acids Res2022
35774010Spatiotemporal MicroRNA-Gene Expression Network Related to Orofacial Clefts.J Dent Res2022
35610053WebCSEA: web-based cell-type-specific enrichment analysis of genes.Nucleic Acids Res2022
35763977Charting the proteome landscape in major psychiatric disorders: From biomarkers to biological pathways towards drug discovery.Eur Neuropsychopharmacol2022
35640139Identifying candidate genes and drug targets for Alzheimer's disease by an integrative network approach using genetic and brain region-specific proteomic data.Hum Mol Genet2022
35812739Causal Inference of Genetic Variants and Genes in Amyotrophic Lateral Sclerosis.Front Genet2022
35412907Hereditary retinoblastoma iPSC model reveals aberrant spliceosome function driving bone malignancies.Proc Natl Acad Sci U S A2022
36531248Editorial: Finding new epigenomics and epigenetics biomarkers for complex diseases and significant developmental events with machine learning methods, Volume II.Front Genet2022
35883662A Method for Bridging Population-Specific Genotypes to Detect Gene Modules Associated with Alzheimer's Disease.Cells2022
36253801scGWAS: landscape of trait-cell type associations by integrating single-cell transcriptomics-wide and genome-wide association studies.Genome Biol2022
35298903Protein tyrosine phosphatase receptor δ serves as the orexigenic asprosin receptor.Cell Metab2022
32615059Molecular signatures identified by integrating gene expression and methylation in non-seminoma and seminoma of testicular germ cell tumours.Epigenetics2021
36654117CleftGeneDB: a resource for annotating genes associated with cleft lip and cleft palate.Sci Bull (Beijing)2021
33741950Deep generative neural network for accurate drug response imputation.Nat Commun2021
33619490Association of <i>CXCR6</i> with COVID-19 severity: Delineating the host genetic factors in transcriptomic regulation.bioRxiv2021
34885134Cell-Type-Specific Profibrotic Scores across Multi-Organ Systems Predict Cancer Prognosis.Cancers (Basel)2021
34155559Association of CXCR6 with COVID-19 severity: delineating the host genetic factors in transcriptomic regulation.Hum Genet2021
34214162Genome-Wide Correlation of DNA Methylation and Gene Expression in Postmortem Brain Tissues of Opioid Use Disorder Patients.Int J Neuropsychopharmacol2021
34201256An Integrative Transcriptomic and Methylation Approach for Identifying Differentially Expressed Circular RNAs Associated with DNA Methylation Change.Biomedicines2021
34086851Distinct effect of prenatal and postnatal brain expression across 20 brain disorders and anthropometric social traits: a systematic study of spatiotemporal modularity.Brief Bioinform2021
33977077DeepVISP: Deep Learning for Virus Site Integration Prediction and Motif Discovery.Adv Sci (Weinh)2021
34284104An integrative study of genetic variants with brain tissue expression identifies viral etiology and potential drug targets of multiple sclerosis.Mol Cell Neurosci2021
34140640Cell-type deconvolution analysis identifies cancer-associated myofibroblast component as a poor prognostic factor in multiple cancer types.Oncogene2021
33946654Rewired Pathways and Disrupted Pathway Crosstalk in Schizophrenia Transcriptomes by Multiple Differential Coexpression Methods.Genes (Basel)2021
34048560DeepFun: a deep learning sequence-based model to decipher non-coding variant effect in a tissue- and cell type-specific manner.Nucleic Acids Res2021
31672653Decoding regulatory structures and features from epigenomics profiles: A Roadmap-ENCODE Variational Auto-Encoder (RE-VAE) model.Methods2021
33288841Convergent genomic and pharmacological evidence of PI3K/GSK3 signaling alterations in neurons from schizophrenia patients.Neuropsychopharmacology2021
33137204KinaseMD: kinase mutations and drug response database.Nucleic Acids Res2021
33272935Gene expression imputation and cell-type deconvolution in human brain with spatiotemporal precision and its implications for brain-related disorders.Genome Res2021
33300042Predicting regulatory variants using a dense epigenomic mapped CNN model elucidated the molecular basis of trait-tissue associations.Nucleic Acids Res2021
33211888CSEA-DB: an omnibus for human complex trait and cell type associations.Nucleic Acids Res2021
32578842Deep4mC: systematic assessment and computational prediction for DNA N4-methylcytosine sites by deep learning.Brief Bioinform2021
31598702VISDB: a manually curated database of viral integration sites in the human genome.Nucleic Acids Res2020
31965022MicroRNA and transcription factor co-regulatory networks and subtype classification of seminoma and non-seminoma in testicular germ cell tumors.Sci Rep2020
31902369Multi-level transcriptome sequencing identifies COL1A1 as a candidate marker in human heart failure progression.BMC Med2020
31680168TSEA-DB: a trait-tissue association map for human complex traits and diseases.Nucleic Acids Res2020
320915916mA-Finder: a novel online tool for predicting DNA N6-methyladenine sites in genomes.Bioinformatics2020
33031748A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.Am J Hum Genet2020
33371872Characterization of genome-wide association study data reveals spatiotemporal heterogeneity of mental disorders.BMC Med Genomics2020
33193747Editorial: Advanced Interpretable Machine Learning Methods for Clinical NGS Big Data of Complex Hereditary Diseases.Front Genet2020
33178176Differential Expression of Viral Transcripts From Single-Cell RNA Sequencing of Moderate and Severe COVID-19 Patients and Its Implications for Case Severity.Front Microbiol2020
33234712A developmental stage-specific network approach for studying dynamic co-regulation of transcription factors and microRNAs during craniofacial development.Development2020
33262330Retraction Note: Identification of de novo mutations in prenatal neurodevelopment-associated genes in schizophrenia in two Han Chinese patient-sibling family-based cohorts.Transl Psychiatry2020
32873781Identification of de novo mutations in prenatal neurodevelopment-associated genes in schizophrenia in two Han Chinese patient-sibling family-based cohorts.Transl Psychiatry2020
32585626H19, a Long Non-coding RNA, Mediates Transcription Factors and Target Genes through Interference of MicroRNAs in Pan-Cancer.Mol Ther Nucleic Acids2020
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Collaborators

Zhongming Zhao
Center for Precision Health, The University of Texas Health Science Center at Houston
Co-authored papers 153
Yulin Dai
The University of Texas Health Science Center at Houston.
Co-authored papers 32
Xiangning Chen
Center for Precision Health, The University of Texas Health Science Center at Houston
Co-authored papers 15
Kenneth S Kendler
Virginia Commonwealth University
Co-authored papers 14
Jingchun Chen
Nevada Institute of Personalized Medicine, University of Nevada Las Vegas
Co-authored papers 9
Jingchun Sun
The University of Texas Health Science Center at Houston
Co-authored papers 9
Edwin J C G van den Oord
Co-authored papers 6
Scott L Letendre
University of California, university of california san diego
Co-authored papers 5
Donald Franklin
University of California San Diego
Co-authored papers 5
Brien P Riley
Virginia Commonwealth University
Co-authored papers 5
Ronald J Ellis
University of California
Co-authored papers 5
Todd Hulgan
Vanderbilt University Medical Center
Co-authored papers 5
Asha R Kallianpur
Cleveland Clinic/Lerner Research Institute
Co-authored papers 5
Pora Kim
The University of Texas Health Science Center at Houston
Co-authored papers 5
David C Samuels
Vanderbilt University
Co-authored papers 4
Igor Grant
University of California San Diego
Co-authored papers 4
David B Clifford
Washington University School of Medicine
Co-authored papers 3
Mary Kay Washington
Co-authored papers 3
Xi Chen
Co-authored papers 3
John Allen McCutchan
University of California San Diego
Co-authored papers 3
Goo Jun
University of Texas Health Science Center at Houston
Co-authored papers 3
Ming T Tsuang
University of California San Diego
Co-authored papers 3
Ann C Collier
University of Washington
Co-authored papers 3
Benjamin B Gelman
University of Texas Medical Branch
Co-authored papers 3
Jill S Barnholtz-Sloan
National Cancer Institute
Co-authored papers 3
William S Bush
Cleveland Institute for Computational Biology, Case Western Reserve University
Co-authored papers 3
Jain-Shing Wu
Nevada Institute of Personalized Medicine, University of Nevada
Co-authored papers 3
David M Simpson
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Dung-Fang Lee
Co-authored papers 3
Travis Mize
Institute for Behavioral Genetics, University of Colorado
Co-authored papers 3
Release 1.2