Skip to Main Content

Author Details

Brian J Haas
Broad Institute of MIT and Harvard
1981
119
67
PMIDPaper TitleJournal TitlePublished Year
37323575Targeted <i>in silico</i> characterization of fusion transcripts in tumor and normal tissues via FusionInspector.Cell Rep Methods2023
37323575Targeted <i>in silico</i> characterization of fusion transcripts in tumor and normal tissues via FusionInspector.Cell Rep Methods2023
34146471A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.Cell Syst2021
33942720Multiplexed mRNA assembly into ribonucleoprotein particles plays an operon-like role in the control of yeast cell physiology.Elife2021
34099491Gene Fusions Create Partner and Collateral Dependencies Essential to Cancer Cell Survival.Cancer Res2021
34146471A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.Cell Syst2021
33495604Opposing immune and genetic mechanisms shape oncogenic programs in synovial sarcoma.Nat Med2021
33495604Opposing immune and genetic mechanisms shape oncogenic programs in synovial sarcoma.Nat Med2021
33942720Multiplexed mRNA assembly into ribonucleoprotein particles plays an operon-like role in the control of yeast cell physiology.Elife2021
34099491Gene Fusions Create Partner and Collateral Dependencies Essential to Cancer Cell Survival.Cancer Res2021
32163674von Willebrand factor D and EGF domains is an evolutionarily conserved and required feature of blastemas capable of multitissue appendage regeneration.Evol Dev2020
32163674von Willebrand factor D and EGF domains is an evolutionarily conserved and required feature of blastemas capable of multitissue appendage regeneration.Evol Dev2020
32383980Imaging-AMARETTO: An Imaging Genomics Software Tool to Interrogate Multiomics Networks for Relevance to Radiography and Histopathology Imaging Biomarkers of Clinical Outcomes.JCO Clin Cancer Inform2020
32383980Imaging-AMARETTO: An Imaging Genomics Software Tool to Interrogate Multiomics Networks for Relevance to Radiography and Histopathology Imaging Biomarkers of Clinical Outcomes.JCO Clin Cancer Inform2020
31068700Next-generation characterization of the Cancer Cell Line Encyclopedia.Nature2019
31639029Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods.Genome Biol2019
31068700Next-generation characterization of the Cancer Cell Line Encyclopedia.Nature2019
31639029Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods.Genome Biol2019
29789628Targetable vulnerabilities in T- and NK-cell lymphomas identified through preclinical models.Nat Commun2018
30514844Transcriptomic landscape of the blastema niche in regenerating adult axolotl limbs at single-cell resolution.Nat Commun2018
30418868SynerClust: a highly scalable, synteny-aware orthologue clustering tool.Microb Genom2018
29789628Targetable vulnerabilities in T- and NK-cell lymphomas identified through preclinical models.Nat Commun2018
30514844Transcriptomic landscape of the blastema niche in regenerating adult axolotl limbs at single-cell resolution.Nat Commun2018
30418868SynerClust: a highly scalable, synteny-aware orthologue clustering tool.Microb Genom2018
28062095The liver transcriptome of suckermouth armoured catfish (Pterygoplichthys anisitsi, Loricariidae): Identification of expansions in defensome gene families.Mar Pollut Bull2017
28648452Advances in Decoding Axolotl Limb Regeneration.Trends Genet2017
28902842The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.Nature2017
28805210Corrigendum: Contribution of classical end-joining to PTEN inactivation in p53-mediated glioblastoma formation and drug-resistant survival.Nat Commun2017
28874473Revitalization of a Forward Genetic Screen Identifies Three New Regulators of Fungal Secondary Metabolism in the Genus Aspergillus.mBio2017
29143821Erratum: The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.Nature2017
28267875Loggerhead sea turtle embryos (Caretta caretta) regulate expression of stress response and developmental genes when exposed to a biologically realistic heat stress.Mol Ecol2017
28062095The liver transcriptome of suckermouth armoured catfish (Pterygoplichthys anisitsi, Loricariidae): Identification of expansions in defensome gene families.Mar Pollut Bull2017
28094268Contribution of classical end-joining to PTEN inactivation in p53-mediated glioblastoma formation and drug-resistant survival.Nat Commun2017
28099853A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors.Cell Rep2017
28099853A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors.Cell Rep2017
28267875Loggerhead sea turtle embryos (Caretta caretta) regulate expression of stress response and developmental genes when exposed to a biologically realistic heat stress.Mol Ecol2017
28094268Contribution of classical end-joining to PTEN inactivation in p53-mediated glioblastoma formation and drug-resistant survival.Nat Commun2017
29143821Erratum: The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.Nature2017
28648452Advances in Decoding Axolotl Limb Regeneration.Trends Genet2017
28805210Corrigendum: Contribution of classical end-joining to PTEN inactivation in p53-mediated glioblastoma formation and drug-resistant survival.Nat Commun2017
28902842The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.Nature2017
28874473Revitalization of a Forward Genetic Screen Identifies Three New Regulators of Fungal Secondary Metabolism in the Genus Aspergillus.mBio2017
26968626Use of the MS2 aptamer and coat protein for RNA localization in yeast: A response to "MS2 coat proteins bound to yeast mRNAs block 5' to 3' degradation and trap mRNA decay products: implications for the localization of mRNAs by MS2-MCP system".RNA2016
26968626Use of the MS2 aptamer and coat protein for RNA localization in yeast: A response to "MS2 coat proteins bound to yeast mRNAs block 5' to 3' degradation and trap mRNA decay products: implications for the localization of mRNAs by MS2-MCP system".RNA2016
25757467Transcriptome profiling of the dynamic life cycle of the scypohozoan jellyfish Aurelia aurita.BMC Genomics2015
25757467Transcriptome profiling of the dynamic life cycle of the scypohozoan jellyfish Aurelia aurita.BMC Genomics2015
26430063Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells.Genome Res2015
26638175A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation.Mol Cell2015
26416668Genome Sequences of Three Phytopathogenic Species of the Magnaporthaceae Family of Fungi.G3 (Bethesda)2015
26430063Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells.Genome Res2015
  • 1 - 50 of 238

Recommended Authors

Artem S Kasianov
Institute for Information Transmission Problems of the Russian Academy of Sciences
Career Start Year 2011
Number of shared co-authors 4
David Anderson de Lima Morais
Universite de Sherbrooke
Career Start Year 2010
Number of shared co-authors 4
Salvador Capella-Gutierrez
Spanish National Bioinformatics Institute (INB/ELIXIR-ES)
Career Start Year 2009
Number of shared co-authors 9
Nuno A Fonseca
European Bioinformatics Institute
Career Start Year 2008
Number of shared co-authors 11
Francesc L??pez-Gir??ldez
Yale Center for Genomic Analysis
Career Start Year 2005
Number of shared co-authors 3
Harshavardhan Doddapaneni
Baylor College of Medicine
Career Start Year 2004
Number of shared co-authors 25
Brad A Chapman
Harvard T.H. Chan School of Public Health
Career Start Year 2003
Number of shared co-authors 5
Vera van Noort
Leiden University, Institute of Biology Leiden
Career Start Year 2003
Number of shared co-authors 2
Toni Gabald??n
Catalan Institution for Research and Advanced Studies
Career Start Year 2003
Number of shared co-authors 12
Scott J Emrich
The Pennsylvania State University College of Medicine
Career Start Year 2002
Number of shared co-authors 34
Brent Kronmiller
Center for Quantitative Life Sciences, Oregon State University
Career Start Year 2002
Number of shared co-authors 11
Don Gilbert
Indiana University
Career Start Year 2002
Number of shared co-authors 51
Yaron S Butterfield
Brain Tumour Foundation of Canada
Career Start Year 2002
Number of shared co-authors 26
Tyler Alioto
Universitat de Barcelona (UB)
Career Start Year 2001
Number of shared co-authors 26
Jun Yu
Beijing Institute of Genomics, Chinese Academy of Sciences
Career Start Year 2001
Number of shared co-authors 29
Kim Rutherford
University of Cambridge
Career Start Year 2000
Number of shared co-authors 33
Kevin A T Silverstein
Minnesota Supercomputing Institute, University of Minnesota
Career Start Year 2000
Number of shared co-authors 11
Ana Conesa
Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)
Career Start Year 2000
Number of shared co-authors 3
Jeong-Hyeon Choi
National Marine Biodiversity Institute of Korea
Career Start Year 2000
Number of shared co-authors 18
Rajkumar Sasidharan
University of California los angeles
Career Start Year 2000
Number of shared co-authors 2
Karsten Hokamp
Smurfit Institute of Genetics, Trinity College of Dublin
Career Start Year 1999
Number of shared co-authors 23
C Titus Brown
University of California davis
Career Start Year 1999
Number of shared co-authors 26
David R Powell
Biomedicine Discovery Institute, Monash University
Career Start Year 1998
Number of shared co-authors 2
Thomas Girke
Institute for Integrative Genome Biology, University of California Riverside
Career Start Year 1998
Number of shared co-authors 1
Vincent Magrini
The Ohio State University
Career Start Year 1997
Number of shared co-authors 25
Terry Gaasterland
Scripps Institution of Oceanography, University of California San Diego
Career Start Year 1994
Number of shared co-authors 26
Peer Bork
University of Wurzburg
Career Start Year 1989
Number of shared co-authors 82
Lincoln Stein
Ontario Institute for Cancer Research, University Avenue
Career Start Year 1986
Number of shared co-authors 43
Peter J A Cock
James Hutton Institute
Career Start Year 1974
Number of shared co-authors 3
John S Mattick
Australia UNSW RNA Institute
Career Start Year 1951
Number of shared co-authors 26

Collaborators

Jennifer R Wortman
Broad Institute of MIT and Harvard
Co-authored papers 38
Owen White
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 23
Steven L Salzberg
Center for Computational Biology, Johns Hopkins University
Co-authored papers 21
Bruce W Birren
Broad Institute of MIT and Harvard
Co-authored papers 17
Chad Nusbaum
Co-authored papers 15
Claire M Fraser
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 15
Jonathan Crabtree
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 12
Aviv Regev
Broad Institute of MIT and Harvard
Co-authored papers 11
Christopher A Desjardins
Broad Institute
Co-authored papers 9
Arthur L Delcher
Center for Computational Biology, Johns Hopkins School of Medicine
Co-authored papers 9
Mihaela Pertea
Center for Computational Biology, Johns Hopkins University
Co-authored papers 8
Linda Hannick
Inc., Frederick National Laboratory for Cancer Research
Co-authored papers 8
Vishvanath Nene
International Livestock Research Institute (ILRI)
Co-authored papers 7
Joshua Orvis
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 7
Carsten Russ
Co-authored papers 7
Chinnappa D Kodira
GE Global Research Center
Co-authored papers 6
Elodie Ghedin
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 6
Michael C Schatz
Johns Hopkins University
Co-authored papers 6
Manfred Grabherr
Co-authored papers 5
Mario Stanke
Institut fur Mathematik und Informatik, Universitat Greifswald
Co-authored papers 5
Jeremy Peterson
The Institute for Genomic Research, 9712 Medical Center Drive
Co-authored papers 5
Samuel V Angiuoli
Personal Genome Diagnostics Inc.
Co-authored papers 5
Matthew Berriman
Wellcome Sanger Institute
Co-authored papers 5
Douglas W Fadrosh
University of California san francisco
Co-authored papers 4
Neil Hall
Earlham Institute
Co-authored papers 4
Jane M Carlton
Center for Genomics and Systems Biology
Co-authored papers 4
Timothy L Tickle
Broad Institute
Co-authored papers 4
Jonathan H Badger
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 4
Paul A Godfrey
Institute of Technology, Broad Institute of Harvard and Massachusetts
Co-authored papers 4
Ian T Paulsen
Macquarie University
Co-authored papers 4
Release 1.2