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Author Details

Joseph W Carlson
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
2002
40
29
PMIDPaper TitleJournal TitlePublished Year
36946261A view of the pan-genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.).Plant Genome2024
36946261A view of the pan-genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.).Plant Genome2024
37526283JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.Nucleic Acids Res2023
37526283JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.Nucleic Acids Res2023
36083267GENESPACE tracks regions of interest and gene copy number variation across multiple genomes.Elife2022
36083267GENESPACE tracks regions of interest and gene copy number variation across multiple genomes.Elife2022
35422045Chromosome evolution and the genetic basis of agronomically important traits in greater yam.Nat Commun2022
35422045Chromosome evolution and the genetic basis of agronomically important traits in greater yam.Nat Commun2022
34226565Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding.Nat Commun2021
34226565Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding.Nat Commun2021
31245768Flowering plant immune repertoires expand under mycorrhizal symbiosis.Plant Direct2019
31245768Flowering plant immune repertoires expand under mycorrhizal symbiosis.Plant Direct2019
27762356Genome evolution in the allotetraploid frog Xenopus laevis.Nature2016
27762356Genome evolution in the allotetraploid frog Xenopus laevis.Nature2016
25589440The Release 6 reference sequence of the Drosophila melanogaster genome.Genome Res2015
25589440The Release 6 reference sequence of the Drosophila melanogaster genome.Genome Res2015
25897122The BioMart community portal: an innovative alternative to large, centralized data repositories.Nucleic Acids Res2015
25897122The BioMart community portal: an innovative alternative to large, centralized data repositories.Nucleic Acids Res2015
24670639Diversity and dynamics of the Drosophila transcriptome.Nature2014
24670639Diversity and dynamics of the Drosophila transcriptome.Nature2014
22685694Global patterns of tissue-specific alternative polyadenylation in Drosophila.Cell Rep2012
22685694Global patterns of tissue-specific alternative polyadenylation in Drosophila.Cell Rep2012
21177961Genome-wide analysis of promoter architecture in Drosophila melanogaster.Genome Res2011
21370071Development of expression-ready constructs for generation of proteomic libraries.Methods Mol Biol2011
21179090The developmental transcriptome of Drosophila melanogaster.Nature2011
21515576The Drosophila gene disruption project: progress using transposons with distinctive site specificities.Genetics2011
21177962The transcriptional diversity of 25 Drosophila cell lines.Genome Res2011
21177961Genome-wide analysis of promoter architecture in Drosophila melanogaster.Genome Res2011
22036573A protein complex network of Drosophila melanogaster.Cell2011
21985007MiMIC: a highly versatile transposon insertion resource for engineering Drosophila melanogaster genes.Nat Methods2011
21985007MiMIC: a highly versatile transposon insertion resource for engineering Drosophila melanogaster genes.Nat Methods2011
22036573A protein complex network of Drosophila melanogaster.Cell2011
21515576The Drosophila gene disruption project: progress using transposons with distinctive site specificities.Genetics2011
21370071Development of expression-ready constructs for generation of proteomic libraries.Methods Mol Biol2011
21179090The developmental transcriptome of Drosophila melanogaster.Nature2011
21177962The transcriptional diversity of 25 Drosophila cell lines.Genome Res2011
20876565A molecularly defined duplication set for the X chromosome of Drosophila melanogaster.Genetics2010
20876565A molecularly defined duplication set for the X chromosome of Drosophila melanogaster.Genetics2010
21177974Identification of functional elements and regulatory circuits by Drosophila modENCODE.Science2010
21177974Identification of functional elements and regulatory circuits by Drosophila modENCODE.Science2010
19465919Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster.Nat Methods2009
19465919Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster.Nat Methods2009
18621688Tools for neuroanatomy and neurogenetics in Drosophila.Proc Natl Acad Sci U S A2008
18621688Tools for neuroanatomy and neurogenetics in Drosophila.Proc Natl Acad Sci U S A2008
17569867Sequence finishing and mapping of Drosophila melanogaster heterochromatin.Science2007
17908964Amplification of PVT1 contributes to the pathophysiology of ovarian and breast cancer.Clin Cancer Res2007
17994088Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.Nature2007
17989253Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes.Genome Res2007
18039871Phylogenetic and genomewide analyses suggest a functional relationship between kayak, the Drosophila fos homolog, and fig, a predicted protein phosphatase 2c nested within a kayak intron.Genetics2007
17569867Sequence finishing and mapping of Drosophila melanogaster heterochromatin.Science2007
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Collaborators

Susan E Celniker
Lawrence Berkeley National Laboratory
Co-authored papers 26
Roger A Hoskins
University of California berkeley
Co-authored papers 17
Kenneth H Wan
Lawrence Berkeley National Laboratory
Co-authored papers 16
Charles Yu
Co-authored papers 10
Gerald M Rubin
The University of Florida
Co-authored papers 10
Mark Stapleton
Lawrence Berkeley National Laboratory
Co-authored papers 8
Soo Park
Lawrence Berkeley National Laboratory
Co-authored papers 7
Reed A George
Howard Hughes Medical Institute
Co-authored papers 6
Brenton R Graveley
Co-authored papers 6
Shengqiang Shu
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 6
Robert Svirskas
Howard Hughes Medical Institute
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Erwin Frise
Fabric Genomics Inc.
Co-authored papers 5
Hugo J Bellen
Baylor College of Medicine
Co-authored papers 5
Jane M Landolin
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James B Brown
Co-authored papers 4
Thomas R Gingeras
Stanley Institute for Cognitive Genomics
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Gary H Karpen
University of California Berkeley
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Norbert Perrimon
Co-authored papers 4
Carrie A Davis
Stanford University
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Ann S Hammonds
Lawrence Berkeley National Laboratory
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Eric C Lai
Co-authored papers 4
Philipp Kapranov
Co-authored papers 3
Michael R Brent
Co-authored papers 3
Suzanna E Lewis
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Co-authored papers 3
Barret D Pfeiffer
Howard Hughes Medical Institute
Co-authored papers 3
Antonio Bernardo Carvalho
Instituto de Biologia, Universidade Federal do Rio de Janeiro
Co-authored papers 3
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Manolis Kellis
Massachusetts Institute of Technology
Co-authored papers 3
Allan C Spradling
Carnegie Institution for Science/Howard Hughes Medical Institute
Co-authored papers 3
Peter J Bickel
Co-authored papers 3
Release 1.2