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Author Details

Deepak Mani
2003
59
40
PMIDPaper TitleJournal TitlePublished Year
37171958Deep proteomics identifies shared molecular pathway alterations in synapses of patients with schizophrenia and bipolar disorder and mouse model.Cell Rep2023
37012232Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.Nat Commun2023
35236940Cancer proteogenomics: current impact and future prospects.Nat Rev Cancer2022
36220098In situ cell-type-specific cell-surface proteomic profiling in mice.Neuron2022
36001024Proteogenomic Markers of Chemotherapy Resistance and Response in Triple-Negative Breast Cancer.Cancer Discov2022
35688132The Parkinson's disease protein alpha-synuclein is a modulator of processing bodies and mRNA stability.Cell2022
34692554Editorial: Proteomics and Its Applications in Cancer.Frontiers in Oncology2021
33534888Biomarkers to Distinguish Bacterial From Viral Pediatric Clinical Pneumonia in a Malaria-Endemic Setting.Clin Infect Dis2021
33577785Proteogenomic and metabolomic characterization of human glioblastoma.Cancer Cell2021
34040252PANOPLY: a cloud-based platform for automated and reproducible proteogenomic data analysis.Nat Methods2021
33417831Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.Cancer Cell2021
34569154A highly multiplexed quantitative phosphosite assay for biology and preclinical studies.Mol Syst Biol2021
32094324Discovery of suppressors of CRMP2 phosphorylation reveals compounds that mimic the behavioral effects of lithium on amphetamine-induced hyperlocomotion.Transl Psychiatry2020
31955847Cell-Surface Proteomic Profiling in the Fly Brain Uncovers Wiring Regulators.Cell2020
31484774Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells.Proc Natl Acad Sci U S A2019
29472518Mass Spectrometry-Based Proteomics Reveals Potential Roles of NEK9 and MAP2K4 in Resistance to PI3K Inhibition in Triple-Negative Breast Cancers.Cancer Res2018
30064974Crbn [I391V] is sufficient to confer in vivo sensitivity to thalidomide and its derivatives in mice.Blood2018
30205044Proteomics, Post-translational Modifications, and Integrative Analyses Reveal Molecular Heterogeneity within Medulloblastoma Subgroups.Cancer Cell2018
29988108Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry.Nat Protoc2018
29551269Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis.Cell2018
28183812New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins.Mol Cell Proteomics2017
28348404Proteogenomic integration reveals therapeutic targets in breast cancer xenografts.Nat Commun2017
28456751Methods, Tools and Current Perspectives in Proteogenomics.Mol Cell Proteomics2017
28440318Corrigendum: Proteogenomic integration reveals therapeutic targets in breast cancer xenografts.Nat Commun2017
28071719Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression.Sci Rep2017
27562500Transitioning from Targeted to Comprehensive Mass Spectrometry Using Genetic Algorithms.Journal of the American Society for Mass Spectrometry2016
27251275Proteogenomics connects somatic mutations to signalling in breast cancer.Nature2016
26867747Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.Methods Mol Biol2016
27321643Automated Microchromatography Enables Multiplexing of Immunoaffinity Enrichment of Peptides to Greater than 150 for Targeted MS-Based Assays.Anal Chem2016
26131937Lenalidomide induces ubiquitination and degradation of CK1α in del(5q) MDS.Nature2015
25693799Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma.Mol Cell Proteomics2015
25724909Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury.Mol Cell Proteomics2015
24972168CPTAC Assay Portal: a repository of targeted proteomic assays.Nat Methods2014
24443746Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach.Mol Cell Proteomics2014
24813211A framework for installable external tools in Skyline.Bioinformatics2014
24719451Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels.Mol Cell Proteomics2014
24522978Simplified and efficient quantification of low-abundance proteins at very high multiplex via targeted mass spectrometry.Mol Cell Proteomics2014
23266961Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.Mol Cell Proteomics2013
24082102Identification of apolipoprotein D as a cardioprotective gene using a mouse model of lethal atherosclerotic coronary artery disease.Proc Natl Acad Sci U S A2013
23749302Integrated proteomic analysis of post-translational modifications by serial enrichment.Nat Methods2013
23689285Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple reaction monitoring-MS (LC-MRM-MS).Mol Cell Proteomics2013
22210691iTRAQ labeling is superior to mTRAQ for quantitative global proteomics and phosphoproteomics.Mol Cell Proteomics2012
22505724Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.Mol Cell Proteomics2012
22908275Functional analysis of receptor tyrosine kinase mutations in lung cancer identifies oncogenic extracellular domain mutations of ERBB2.Proc Natl Acad Sci U S A2012
23176545Statistical characterization of multiple-reaction monitoring mass spectrometry (MRM-MS) assays for quantitative proteomics.BMC Bioinformatics2012
22199228Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma.Mol Cell Proteomics2012
21685905A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease.Nat Biotechnol2011
21884583Clustering with position-specific constraints on variance: applying redescending M-estimators to label-free LC-MS data analysis.BMC Bioinformatics2011
20022980Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry.Clin Chem2010
19098899Bead-based profiling of tyrosine kinase phosphorylation identifies SRC as a potential target for glioblastoma therapy.Nat Biotechnol2009
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The Barnett Institute of Chemical and Biological Analysis, Northeastern University
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Institute for Systems Genetics, NYU Grossman School of Medicine
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McDonnell Genome Institute, Washington University School of Medicine
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Baylor College of Medicine
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McGill University
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