Author details

Full Name

Jie Tan

Affiliation

College of Engineering and Center for Quantitative Biology, Peking University

ORCID

Career Start Year

2014

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
34383025	HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes.	Bioinformatics	2022
36116627	Heterogeneous catalysis mediated by light, electricity and enzyme via machine learning: Paradigms, applications and prospects.	Chemosphere	2022
34498685	DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach.	Gigascience	2021
32091572	PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning.	Bioinformatics	2020
31220250	PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning.	Gigascience	2019
29988723	PathCORE-T: identifying and visualizing globally co-occurring pathways in large transcriptomic compendia.	BioData Min	2018
28711280	Unsupervised Extraction of Stable Expression Signatures from Public Compendia with an Ensemble of Neural Networks.	Cell Syst	2017
29166858	ADAGE signature analysis: differential expression analysis with data-defined gene sets.	BMC Bioinformatics	2017
26844019	Cross-platform normalization of microarray and RNA-seq data for machine learning applications.	PeerJ	2016
27822512	ADAGE-Based Integration of Publicly Available <i>Pseudomonas aeruginosa</i> Gene Expression Data with Denoising Autoencoders Illuminates Microbe-Host Interactions.	mSystems	2016
25592575	Unsupervised feature construction and knowledge extraction from genome-wide assays of breast cancer with denoising autoencoders.	Pac Symp Biocomput	2015
24799088	Big data bioinformatics.	J Cell Physiol	2014

1 - 12 of 12

Jake Crawford

Perelman School of Medicine, University of Pennsylvania

Career Start Year 2018

Number of shared co-authors 4

Taylor Reiter

University of California davis

Career Start Year 2016

Number of shared co-authors 3

Ehsaneddin Asgari

University of California berkeley

Career Start Year 2015

Number of shared co-authors 3

Alexandra J Lee

University of Pennsylvania

Career Start Year 2015

Number of shared co-authors 6

Mickael Leclercq

CHU de Quebec-Laval University Research Center

Career Start Year 2012

Number of shared co-authors 0

H??ctor Corrada Bravo

University of Maryland College Park, College Park

Career Start Year 2009

Number of shared co-authors 0

Chelsea J-T Ju

University of California los angeles

Career Start Year 2008

Number of shared co-authors 0

Kim-Anh L?? Cao

University of Melbourne

Career Start Year 2007

Number of shared co-authors 1

Fangfang Xia

University of Chicago

Career Start Year 2007

Number of shared co-authors 0

Xin Gao

King Abdullah University of Science and Technology (KAUST)

Career Start Year 2007

Number of shared co-authors 0

Stefan R Maetschke

Institute for Molecular Bioscience and ARC Centre of Excellence in Bioinformatics

Career Start Year 2007

Number of shared co-authors 0

Georg Zeller

Max Planck Institute for Developmental Biology

Career Start Year 2007

Number of shared co-authors 1

Gail L Rosen

Drexel University

Career Start Year 2006

Number of shared co-authors 2

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 0

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

Gang Fang

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 1

Arnaud Droit

Centre de Recherche du CHU de Quebec-Universite, Universite Laval

Career Start Year 2005

Number of shared co-authors 0

Dongxiao Zhu

Wayne State University

Career Start Year 2005

Number of shared co-authors 0

Rick Stevens

Argonne National Laboratory

Career Start Year 2004

Number of shared co-authors 0

Ricardo Z N V??ncio

University of Sao Paulo

Career Start Year 2003

Number of shared co-authors 1

Maulik Shukla

University of Chicago

Career Start Year 2003

Number of shared co-authors 0

Ying Xu

The China-Japan Union Hospital, Jilin University

Career Start Year 2002

Number of shared co-authors 0

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 3

Ana Conesa

Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)

Career Start Year 2000

Number of shared co-authors 0

Vladimir B Bajic

King Abdullah University of Science and Technology (KAUST)

Career Start Year 2000

Number of shared co-authors 0

Patrik D'haeseleer

Lawrence Livermore National Laboratory

Career Start Year 1999

Number of shared co-authors 0

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 0

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 0

Jill P Mesirov

University of California San Diego

Career Start Year 1992

Number of shared co-authors 0

Richard Bonneau

Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation

Career Start Year 1983

Number of shared co-authors 3

row(s) 1 - 30 of 30

Casey S Greene

Co-authored papers 7

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 7

Deborah A Hogan

Geisel School of Medicine at Dartmouth

Co-authored papers 4

Kathleen M Chen

Princeton University

Co-authored papers 2

Matthew Ung

Norris Cotton Cancer Center, Geisel School of Medicine at Dartmouth

Co-authored papers 2

Chao Cheng

Baylor College of Medicine