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Author Details

Ian Korf
University of California davis
1998
74
44
PMIDPaper TitleJournal TitlePublished Year
34313795The Mutant Mouse Resource and Research Center (MMRRC): the NIH-supported National Public Repository and Distribution Archive of Mutant Mouse Models in the USA.Mamm Genome2022
35536006Association of Diet and Antimicrobial Resistance in Healthy U.S. Adults.mBio2022
35930941SpecDB: A relational database for archiving biomolecular NMR spectral data.J Magn Reson2022
33758196Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research.Nat Commun2021
33028202A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues.BMC Genomics2020
32028108Fecal metatranscriptomics and glycomics suggest that bovine milk oligosaccharides are fully utilized by healthy adults.J Nutr Biochem2020
32093654Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes.BMC Bioinformatics2020
33193640Association of the Lactase Persistence Haplotype Block With Disease Risk in Populations of European Descent.Front Genet2020
30885266Fecal metatranscriptomics of macaques with idiopathic chronic diarrhea reveals altered mucin degradation and fucose utilization.Microbiome2019
31405126Association of Lactase Persistence Genotypes (rs4988235) and Ethnicity with Dairy Intake in a Healthy U.S. Population.Nutrients2019
29302007Rapid genome shrinkage in a self-fertile nematode reveals sperm competition proteins.Science2018
30133459The collaborative effect of scientific meetings: A study of the International Milk Genomics Consortium.PLoS One2018
30227846Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.BMC Genomics2018
29844248Correction for Gaulke et al., "Intestinal Epithelial Barrier Disruption through Altered Mucosal MicroRNA Expression in Human Immunodeficiency Virus and Simian Immunodeficiency Virus Infections".J Virol2018
29783945SAMSA2: a standalone metatranscriptome analysis pipeline.BMC Bioinformatics2018
28032673Dental Pulp Stem Cells Model Early Life and Imprinted DNA Methylation Patterns.Stem Cells2017
28401891Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce.Nat Commun2017
28882988Autosomal Trisomy and Triploidy Are Corrected During Female Meiosis in <i>Caenorhabditis elegans</i>.Genetics2017
27492360Intron sequences that stimulate gene expression in Arabidopsis.Plant Mol Biol2016
27974215Cumulative Impact of Polychlorinated Biphenyl and Large Chromosomal Duplications on DNA Methylation, Chromatin, and Expression of Autism Candidate Genes.Cell Rep2016
27687690SAMSA: a comprehensive metatranscriptome analysis pipeline.BMC Bioinformatics2016
25757574Comparative Proteomics of Human and Macaque Milk Reveals Species-Specific Nutrition during Postnatal Development.J Proteome Res2015
26253743GC skew is a conserved property of unmethylated CpG island promoters across vertebrates.Nucleic Acids Res2015
25977984Catastrophic chromosomal restructuring during genome elimination in plants.Elife2015
24489371StochHMM: a flexible hidden Markov model tool and C++ library.Bioinformatics2014
24970883The functional significance of common polymorphisms in zinc finger transcription factors.G3 (Bethesda)2014
24918035Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products.PeerJ2014
24672033Intestinal epithelial barrier disruption through altered mucosal microRNA expression in human immunodeficiency virus and simian immunodeficiency virus infections.J Virol2014
23347383The effects of a stimulating intron on the expression of heterologous genes in Arabidopsis thaliana.Plant Biotechnol J2013
24330573Sequencing the transcriptome of milk production: milk trumps mammary tissue.BMC Genomics2013
24296473Genomics: the state of the art in RNA-seq analysis.Nat Methods2013
24086428From genes to milk: genomic organization and epigenetic regulation of the mammary transcriptome.PLoS One2013
23870653Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.Gigascience2013
23868195GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination.Genome Res2013
23530188The human placenta methylome.Proc Natl Acad Sci U S A2013
23269803Comparative genomics of carp herpesviruses.J Virol2013
23363705Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.Genome Biol2013
22387027R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.Mol Cell2012
23020263G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes.BMC Bioinformatics2012
23013524Guiding the design of synthetic DNA-binding molecules with massively parallel sequencing.J Am Chem Soc2012
22766638Holocentric chromosomes: convergent evolution, meiotic adaptations, and genomic analysis.Chromosome Res2012
21427088Comparative and functional analysis of intron-mediated enhancement signals reveals conserved features among plants.Nucleic Acids Res2011
22645558Evidence for a DNA-Based Mechanism of Intron-Mediated Enhancement.Front Plant Sci2011
22053792Myc and Miz-1 have coordinate genomic functions including targeting Hox genes in human embryonic stem cells.Epigenetics Chromatin2011
21784875Large-scale methylation domains mark a functional subset of neuronally expressed genes.Genome Res2011
21889425Breadth by depth: expanding our understanding of the repair of transposon-induced DNA double strand breaks via deep-sequencing.DNA Repair (Amst)2011
21926179Assemblathon 1: a competitive assessment of de novo short read assembly methods.Genome Res2011
21347206Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes.PLoS One2011
19906703Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data.Nucleic Acids Res2010
20609256The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences.BMC Genomics2010
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Collaborators

LaDeana W Hillier
University of Washington
Co-authored papers 5
Richard Durbin
University of Cambridge
Co-authored papers 4
Paul Flicek
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Co-authored papers 4
Mark Yandell
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Co-authored papers 3
Richard K Wilson
The Ohio State University
Co-authored papers 3
Ewan Birney
European Bioinformatics Institute
Co-authored papers 3
Richard A Gibbs
Baylor College of Medicine
Co-authored papers 3
Lucinda Fulton
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Co-authored papers 3
David B Jaffe
Co-authored papers 3
Robert S Fulton
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Co-authored papers 3
John D McPherson
Ontario Institute for Cancer Research
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Michael C Wendl
Washington University in St Louis
Co-authored papers 3
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Baylor College of Medicine
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National Human Genome Research Institute
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Raju Kucherlapati
Harvard Medical School
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Chris P Ponting
The University of Edinburgh
Co-authored papers 2
Jill P Mesirov
University of California San Diego
Co-authored papers 2
Joseph L DeRisi
University of California San Francisco
Co-authored papers 2
Arian F A Smit
Co-authored papers 2
Elia Stupka
Center for Omics Sciences, IRCCS San Raffaele Scientific Institute
Co-authored papers 2
Rayan Chikhi
Co-authored papers 2
Michele Clamp
Harvard University
Co-authored papers 2
Robert W Plumb
Co-authored papers 2
Release 1.2