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Author Details

Rachel Marty Pyke
University of California San Diego
2016
15
11
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37019059Withdrawal of 'Precision Neoantigen Discovery Using Large-scale Immunopeptidomes and Composite Modeling of MHC Peptide Presentation'.Mol Cell Proteomics2023
35414054A machine learning algorithm with subclonal sensitivity reveals widespread pan-cancer human leukocyte antigen loss of heterozygosity.Nat Commun2022
34341053Prediction of Immunotherapy Response in Melanoma through Combined Modeling of Neoantigen Burden and Immune-Related Resistance Mechanisms.Clin Cancer Res2021
34126241Withdrawn: Precision Neoantigen Discovery Using Large-scale Immunopeptidomes and Composite Modeling of MHC Peptide Presentation.Mol Cell Proteomics2021
32430031MHC-I genotype and tumor mutational burden predict response to immunotherapy.Genome Med2020
32807809Strength of immune selection in tumors varies with sex and age.Nat Commun2020
30864318Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival.Pac Symp Biocomput2019
31345234Elevated neoantigen levels in tumors with somatic mutations in the HLA-A, HLA-B, HLA-C and B2M genes.BMC Med Genomics2019
29487895MHC-I genotype drives early immune selection of oncogenic mutations.Mol Cell Oncol2018
30245014Evolutionary Pressure against MHC Class II Binding Cancer Mutations.Cell2018
30550793Evolutionary Pressure against MHC Class II Binding Cancer Mutations.Cell2018
30287485Integrative genomic analysis of mouse and human hepatocellular carcinoma.Proc Natl Acad Sci U S A2018
29107334MHC-I Genotype Restricts the Oncogenic Mutational Landscape.Cell2017
28188128Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer.Cancer Discov2017
27452728Immune DNA signature of T-cell infiltration in breast tumor exomes.Sci Rep2016
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Collaborators

Hannah Carter
University of California San Diego
Co-authored papers 11
Joan Font-Burgada
Fox Chase Cancer Center
Co-authored papers 5
Michael Snyder
Stanford University
Co-authored papers 4
Eric Levy
University of California San Diego
Co-authored papers 3
Wesley K Thompson
The Lundbeck Foundation Initiative for Integrative Psychiatric Research (iPSYCH)
Co-authored papers 3
Ludmil B Alexandrov
Moores Cancer Center, university of california san diego
Co-authored papers 2
Rany M Salem
Co-authored papers 2
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 2
Olivier Harismendy
University of California
Co-authored papers 2
Nicola de Prisco
Columbia University Irving Medical Center
Co-authored papers 2
Michelle Dow
University of California San Diego
Co-authored papers 2
Ekihiro Seki
Co-authored papers 1
Michael Slifker
Fox Chase Cancer Center
Co-authored papers 1
Xingyu Wu
Moores Cancer Center, University of California San Diego
Co-authored papers 1
Andrew M Gross
Illumina Inc.
Co-authored papers 1
James Jensen
University of California San Diego
Co-authored papers 1
Jason F Kreisberg
University of California San Diego
Co-authored papers 1
Jorge Silvio Gutkind
Moores Cancer Center, University of California San Diego
Co-authored papers 1
Saghar Kaabinejadian
Pure MHC LLC
Co-authored papers 1
David Rossell
Universitat Pompeu Fabra
Co-authored papers 1
Emily C Wheeler
University of California
Co-authored papers 1
Hatice Billur Engin
University of California
Co-authored papers 1
Pamela Milani
Co-authored papers 1
Joris van de Haar
the Netherlands Cancer Institute, University of California
Co-authored papers 1
William H Hildebrand
University of Oklahoma Health Sciences Center
Co-authored papers 1
Christopher DeBoever
Stanford University
Co-authored papers 1
Hayato Nakagawa
Co-authored papers 1
Gene W Yeo
University of California
Co-authored papers 1
Chi-Ping Day
Center for Cancer Research, National Cancer Institute
Co-authored papers 1
Koji Taniguchi
Co-authored papers 1
Release 1.2