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Author Details

Barry Demchak
University of California
2006
22
12
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
30878356DDOT: A Swiss Army Knife for Investigating Data-Driven Biological Ontologies.Cell Syst2019
31477170Cytoscape Automation: empowering workflow-based network analysis.Genome Biol2019
29505029Using deep learning to model the hierarchical structure and function of a cell.Nat Methods2018
30030027Theory and Application of Network Biology Toward Precision Medicine.J Mol Biol2018
29983926The Cytoscape Automation app article collection.F1000Res2018
29092941NDEx 2.0: A Clearinghouse for Research on Cancer Pathways.Cancer Res2017
28132844Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy.Mol Cell2017
29023449Network propagation in the cytoscape cyberinfrastructure.PLoS Comput Biol2017
26780094Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.Nat Methods2016
25010407Validity of PALMS GPS scoring of active and passive travel compared with SenseCam.Med Sci Sports Exerc2015
26272981cyNeo4j: connecting Neo4j and Cytoscape.Bioinformatics2015
26594663NDEx, the Network Data Exchange.Cell Syst2015
26672762CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API.F1000Res2015
24271398NeXO Web: the NeXO ontology database and visualization platform.Nucleic Acids Res2014
25580224The Cytoscape app article collection.F1000Res2014
25199793Biological network exploration with Cytoscape 3.Curr Protoc Bioinformatics2014
25075307Porting and using PanGIA for Cytoscape 3: challenges and solutions.F1000Res2014
24104757The anatomy of successful computational biology software.Nat Biotechnol2013
25383258Policy Driven Development: Flexible Policy Insertion for Large Scale Systems.Proc IEEE Int Symp Policies Distrib Syst Netw2012
18693821Data quality for situational awareness during mass-casualty events.AMIA Annu Symp Proc2007
17238353Middleware for reliable mobile medical workflow support in disaster settings.AMIA Annu Symp Proc2006
17238524Situational awareness during mass-casualty events: command and control.AMIA Annu Symp Proc2006
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Collaborators

Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 10
Keiichiro Ono
university of california san diego
Co-authored papers 9
Dexter Pratt (CM4AI)
UC San Diego
Co-authored papers 5
Michael Ku Yu
University of California San Diego
Co-authored papers 4
Leslie A Lenert
Medical University of South Carolina
Co-authored papers 3
Gary D Bader
University of Toronto
Co-authored papers 3
David Welker
University of California San Diego
Co-authored papers 3
John H Morris
University of California san francisco
Co-authored papers 3
Eric Sage
University of California San Diego
Co-authored papers 3
Alexander R Pico
Institute of Data Science and Biotechnology, Gladstone Institutes
Co-authored papers 3
Jing Chen
University of Science and Technology of China
Co-authored papers 3
Anton Nekrutenko
The Pennsylvania State University, University Park
Co-authored papers 2
Christian Lopes
University of Toronto
Co-authored papers 2
Michael Kramer
University of California
Co-authored papers 2
Samson H Fong
University of California San Diego
Co-authored papers 2
Rudolf T Pillich
University of California San Diego
Co-authored papers 2
Piet Molenaar
Academic Medical Center
Co-authored papers 2
Jianzhu Ma
Purdue University
Co-authored papers 2
Aaron Gary
University of California
Co-authored papers 2
Benno Schwikowski
Center for Bioinformatics, Institut Pasteur CNRS
Co-authored papers 2
William J R Longabaugh
Institute for Systems Biology
Co-authored papers 2
Vladimir Rynkov
University of California San Diego
Co-authored papers 2
Tim Hull
University of California
Co-authored papers 2
James T Robinson
University of California San Diego
Co-authored papers 2
David Otasek
University of California San Diego
Co-authored papers 2
Georgi Kolishovski
Co-authored papers 1
Mitchell Flagg
University of California San Diego
Co-authored papers 1
Jean-Claude Farr??
University of California
Co-authored papers 1
Janusz Dutkowski
Data4Cure Inc.
Co-authored papers 1
Carol Miello
Pfizer Inc.
Co-authored papers 1
Release 1.2