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Author Details

Sa??o D??eroski
Jozef Stefan Institute
1996
62
17
PMIDPaper TitleJournal TitlePublished Year
36269073Analysis of hallux valgus angles automatically extracted from 3D foot scans taken in North America, Europe, and Asia.Ergonomics2023
37998891Effect of Location, Disinfection, and Building Materials on the Presence and Richness of Culturable Mycobiota through Oligotrophic Drinking Water Systems.J Fungi (Basel)2023
37612295Machine learning-ready remote sensing data for Maya archaeology.Sci Data2023
38029120Xerophilic fungi contaminating historically valuable easel paintings from Slovenia.Front Microbiol2023
37128582GC-EI-MS datasets of trimethylsilyl (TMS) and <i>tert</i>-butyl dimethyl silyl (TBDMS) derivatives for development of machine learning-based compound identification approaches.Data Brief2023
36836747On the Influence of Aging on Classification Performance in the Visual EEG Oddball Paradigm Using Statistical and Temporal Features.Life (Basel)2023
36831953Correlative Fluorescence and Raman Microscopy to Define Mitotic Stages at the Single-Cell Level: Opportunities and Limitations in the AI Era.Biosensors (Basel)2023
36012848Occurrence, Diversity and Anti-Fungal Resistance of Fungi in Sand of an Urban Beach in Slovenia-Environmental Monitoring with Possible Health Risk Implications.J Fungi (Basel)2022
35508507A catalogue with semantic annotations makes multilabel datasets FAIR.Sci Rep2022
35610234Machine-learning ready data on the thermal power consumption of the Mars Express Spacecraft.Sci Data2022
36109826Machine learning for identification of silylated derivatives from mass spectra.J Cheminform2022
36298313Determining Exception Context in Assembly Operations from Multimodal Data.Sensors (Basel)2022
33307385Biomarker discovery by feature ranking: Evaluation on a case study of embryonal tumors.Comput Biol Med2021
34916483Wet-dry-wet drug screen leads to the synthesis of TS1, a novel compound reversing lung fibrosis through inhibition of myofibroblast differentiation.Cell Death Dis2021
32206435Predictive model for the quantitative analysis of human skin using photothermal radiometry and diffuse reflectance spectroscopy.Biomed Opt Express2020
33816961Error curves for evaluating the quality of feature rankings.PeerJ Comput Sci2020
33339842Multi-task learning for the simultaneous reconstruction of the human and mouse gene regulatory networks.Sci Rep2020
32117143Distinct Types of Gut Microbiota Dysbiosis in Hospitalized Gastroenterological Patients Are Disease Non-related and Characterized With the Predominance of Either <i>Enterobacteriaceae</i> or <i>Enterococcus</i>.Front Microbiol2020
31447146Using machine learning to estimate herbage production and nutrient uptake on Irish dairy farms.J Dairy Sci2019
31844106Analysis of 1.2 million foot scans from North America, Europe and Asia.Sci Rep2019
31744546The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.Genome Biol2019
29367740Combined chemical genetics and data-driven bioinformatics approach identifies receptor tyrosine kinase inhibitors as host-directed antimicrobials.Nat Commun2018
30239704Extensive evaluation of the generalized relevance network approach to inferring gene regulatory networks.Gigascience2018
29991352The evolutionary signal in metagenome phyletic profiles predicts many gene functions.Microbiome2018
29713974Modeling the risk of water pollution by pesticides from imbalanced data.Environ Sci Pollut Res Int2018
29734672Meta-Analysis and Experimental Validation Identified FREM2 and SPRY1 as New Glioblastoma Marker Candidates.Int J Mol Sci2018
29088293Using redescription mining to relate clinical and biological characteristics of cognitively impaired and Alzheimer's disease patients.PLoS One2017
29180685Evaluating the effect of Clostridium difficile conditioned medium on fecal microbiota community structure.Sci Rep2017
27078633Modeling Dynamic Systems with Efficient Ensembles of Process-Based Models.PLoS One2016
28036382Production of Secondary Metabolites in Extreme Environments: Food- and Airborne Wallemia spp. Produce Toxic Metabolites at Hypersaline Conditions.PLoS One2016
27686219Process-based design of dynamical biological systems.Sci Rep2016
27377958TMPRSS2:ERG gene aberrations may provide insight into pT stage in prostate cancer.BMC Urol2016
27005698Learning stochastic process-based models of dynamical systems from knowledge and data.BMC Syst Biol2016
24997992Improved medical image modality classification using a combination of visual and textual features.Comput Med Imaging Graph2015
26350998The discriminatory value of cardiorespiratory interactions in distinguishing awake from anaesthetised states: a randomised observational study.Anaesthesia2015
26641091Semi-Supervised Multi-View Learning for Gene Network Reconstruction.PLoS One2015
26112042Domain-specific model selection for structural identification of the Rab5-Rab7 dynamics in endocytosis.BMC Syst Biol2015
25749362Candida and Fusarium species known as opportunistic human pathogens from customer-accessible parts of residential washing machines.Fungal Biol2015
25461041Modeling water outflow from tile-drained agricultural fields.Sci Total Environ2015
25566222Chaophilic or chaotolerant fungi: a new category of extremophiles?Front Microbiol2014
23353650A large-scale evaluation of computational protein function prediction.Nat Methods2013
24070402Using PPI network autocorrelation in hierarchical multi-label classification trees for gene function prediction.BMC Bioinformatics2013
23664184Changes of poultry faecal microbiota associated with Clostridium difficile colonisation.Vet Microbiol2013
23448979Neuroblastoma tumorigenesis is regulated through the Nm23-H1/h-Prune C-terminal interaction.Sci Rep2013
23469128Gut microbiota patterns associated with colonization of different Clostridium difficile ribotypes.PLoS One2013
23308060Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships.PLoS Comput Biol2013
22031581Using data mining to predict soil quality after application of biosolids in agriculture.J Environ Qual2011
21989196Parameter estimation with bio-inspired meta-heuristic optimization: modeling the dynamics of endocytosis.BMC Syst Biol2011
20044933Predicting gene function using hierarchical multi-label decision tree ensembles.BMC Bioinformatics2010
21309479ADP-ribosylation factor guanine nucleotide-exchange factor 2 (ARFGEF2): a new potential biomarker in Huntington's disease.J Int Med Res2010
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Collaborators

Tomislav ??muc
Ruder Boskovic Institute
Co-authored papers 5
Fran Supek
Catalan Institution for Research and Advanced Studies (ICREA)
Co-authored papers 4
Prajwal Bhat
Royal Holloway University of London
Co-authored papers 2
Slobodan Vucetic
Temple University
Co-authored papers 2
Mark N Wass
University of Kent
Co-authored papers 2
Alberto Paccanaro
University of London
Co-authored papers 2
Julian Gough
Medical Research Council Laboratory of Molecular Biology
Co-authored papers 2
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University College London, Institute of Structural and Molecular Biology
Co-authored papers 2
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University of Missouri
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Marco Falda
University of Padova
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Enrico Lavezzo
University of Padova
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Alfonso E Romero
University of Miami
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Predrag Radivojac
Indiana University
Co-authored papers 2
Paolo Fontana
San Pio Hospital
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Haixuan Yang
University of Galway
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University of Washington
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Hai Fang
University of Bristol
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Stefano Toppo
University of Padova
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Patricia C Babbitt
University of California san francisco
Co-authored papers 2
Asa Ben-Hur
Colorado State University
Co-authored papers 2
Michal Linial
Institute of Life Sciences, The Hebrew University of Jerusalem
Co-authored papers 2
Daisuke Kihara
Purdue University
Co-authored papers 2
Iddo Friedberg
Iowa State University
Co-authored papers 2
David T Jones
University College London
Co-authored papers 2
Nives ??kunca
ETH Zurich, Universitatstrasse 19
Co-authored papers 2
Steven E Brenner
University of California berkeley
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Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 2
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 2
Olivier Lichtarge
Baylor College of Medicine
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Domenico Cozzetto
Imperial College London
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