Author details

Full Name

Shikui Tu

Affiliation

ORCID

Career Start Year

2011

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37040253	RefinePocket: An Attention-Enhanced and Mask-Guided Deep Learning Approach for Protein Binding Site Prediction.		2023
37279131	Self-Organizing a Latent Hierarchy of Sketch Patterns for Controllable Sketch Synthesis.		2023
36481459	IA-FaceS: A bidirectional method for semantic face editing.		2023
37123440	A deep-learning method for the end-to-end prediction of intracranial aneurysm rupture risk.		2023
36867661	MGAE-DC: Predicting the synergistic effects of drug combinations through multi-channel graph autoencoders.		2023
35149416	Deep Rival Penalized Competitive Learning for low-resolution face recognition.	Neural Networks	2022
36085149	GLH/VASA helicases promote germ granule formation to ensure the fidelity of piRNA-mediated transcriptome surveillance.	Nat Commun	2022
36136353	Predicting cell line-specific synergistic drug combinations through a relational graph convolutional network with attention mechanism.	Briefings in Bioinformatics	2022
36714828	AlphaDrug: protein target specific de novo molecular generation.		2022
33417561	Detection of Phenotype-Related Mutations of COVID-19 via the Whole Genomic Data.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2021
33601289	Controllable stroke-based sketch synthesis from a self-organized latent space.	Neural Networks	2021
30357353	piRTarBase: a database of piRNA targeting sites and their roles in gene regulation.	Nucleic Acids Research	2019
31650864	Integrated analysis of transcriptome-wide mA methylome of osteosarcoma stem cells enriched by chemotherapy.	Epigenomics	2019
29456082	Identification of piRNA Binding Sites Reveals the Argonaute Regulatory Landscape of the C.Â elegans Germline.	Cell	2018
30257203	Co-dependent Assembly of Drosophila piRNA Precursor Complexes and piRNA Cluster Heterochromatin.	Cell Rep	2018
30575518	The TRIM-NHL protein NHL-2 is a co-factor in the nuclear and somatic RNAi pathways in <i>C</i>. e<i>legans</i>.	Elife	2018
29897582	pirScan: a webserver to predict piRNA targeting sites and to avoid transgene silencing in C. elegans.	Nucleic Acids Res	2018
29420292	The piRNA targeting rules and the resistance to piRNA silencing in endogenous genes.	Science	2018
29456136	A Sex Chromosome piRNA Promotes Robust Dosage Compensation and Sex Determination in C.Â elegans.	Dev Cell	2018
29456100	The Coding Regions of Germline mRNAs Confer Sensitivity to Argonaute Regulation in C.Â elegans.	Cell Rep	2018
29297371	A unified frame of predicting side effects of drugs by using linear neighborhood similarity.	BMC Syst Biol	2017
28919205	Adaptive Evolution Leads to Cross-Species Incompatibility in the piRNA Transposon Silencing Machinery.	Dev Cell	2017
27074043	Accurate Prediction of Transposon-Derived piRNAs by Integrating Various Sequential and Physicochemical Features.	PLoS One	2016
26919432	The RNase PARN-1 Trims piRNA 3' Ends to Promote Transcriptome Surveillance in C. elegans.	Cell	2016
25600116	Glycolytic enzymes localize to ribonucleoprotein granules in Drosophila germ cells, bind Tudor and protect from transposable elements.	EMBO Rep	2015
25510497	Comparative functional characterization of the CSR-1 22G-RNA pathway in Caenorhabditis nematodes.	Nucleic Acids Res	2015
24906152	The HP1 homolog rhino anchors a nuclear complex that suppresses piRNA precursor splicing.	Cell	2014
23412653	Networking development by Boolean logic.	Nucleus	2013
22820312	Transcription network analysis by a sparse binary factor analysis algorithm.	Journal of integrative bioinformatics	2012
22166008	A binary matrix factorization algorithm for protein complex prediction.	Proteome Science	2011